Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: GMAP Upstream-Contact: Thomas Wu , Colin K. Watanabe Source: http://research-pub.gene.com/gmap/ Files: * Copyright: 2011-2014 Genentech, Inc. License: other Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Package"), to use, copy, and distribute copies of the Package, without modifications, provided that the above copyright notice and this permission notice are included in all copies or substantial portions of the Package. Distribution of this Package as part of a commercial software product requires prior arrangement with the Developers. . Permission is also hereby granted, free of charge, to any person obtaining a copy of this Package, to modify your copy or copies of the Package or any portion of it, provided that you use the modified Package only within your corporation or organization. Distribution of a modified version of this Package requires prior arrangement with the Developers. . Genome databases, map files, and other result files produced as output from software in this Package do not automatically fall under the copyright of this Package, but belong to whoever generated them, and may be distributed freely. . IN NO EVENT SHALL GENENTECH, INC. BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, OR OTHER LIABILITY, INCLUDING LOST PROFITS, ARISING FROM THE USE OF THIS SOFTWARE. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. GENENTECH, INC. HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS. Comment: Some inspiration and code was taken from https://github.com/lemire/FastPFor, covered by Apache-2.0 License Files: src/getopt* config/libtool.m4 config/missing config/compile config/config.sub config/config.guess config/ltmain.sh Copyright: 1992-2009, Free Software Foundation, Inc. License: LGPL-2.1+ See `/usr/share/common-licenses/LGPL-2.1'. Files: config/ax_mpi.m4 config/ax_check_compile_flag.m4 Copyright: 2008, Steven G. Johnson 2008, Matteo Frigo 2008, Steven G. Johnson 2008, Julian C. Cummings 2013, Michael Petch 2008, Guido U. Draheim 2011, Maarten Bosmans License: GPL-3 See `/usr/share/common-licenses/GPL-3'. Files: config/ltsugar.m4 config/ltoptions.m4 config/ltversion.m4 aclocal.m4 Copyright: 1996-2014, Free Software Foundation, Inc. License: FSFUL This file is free software; the Free Software Foundation gives unlimited permission to copy and/or distribute it, with or without modifications, as long as this notice is preserved. Files: config/ax_ext.m4 Copyright: 2007, Christophe Tournayre 2013, Michael Petch License: all-permissive Copying and distribution of this file, with or without modification, are permitted in any medium without royalty provided the copyright notice and this notice are preserved. This file is offered as-is, without any warranty. Files: config/install-sh Copyright: 1994 X Consortium License: X11 Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: . The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE X CONSORTIUM BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. . Except as contained in this notice, the name of the X Consortium shall not be used in advertising or otherwise to promote the sale, use or other dealings in this Software without prior written authorization from the X Consortium. Files: src/saca-k* Copyright: 2012 Ge Nong License: Expat Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: . The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. Files: src/fastlog.h Copyright: 2012 Paul Mineiro License: BSD-3-clause Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. . * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. . * Neither the name of Paul Mineiro nor the names of other contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Files: debian/* Copyright: 2011 Shaun Jackman 2012-2014 Andreas Tille 2016 Alex Mestiashvili License: ISC Permission to use, copy, modify, and/or distribute this software for any purpose with or without fee is hereby granted, provided that the above copyright notice and this permission notice appear in all copies.