bioperl (1.6.1-1ubuntu1) lucid; urgency=low * Merge from Debian testing, remaining changes: - disable tests, they produce a FTBFS trying to access the network during run. -- Ilya Barygin Wed, 27 Jan 2010 22:48:22 +0300 bioperl (1.6.1-1) unstable; urgency=low * New upstream release with new features and many corrections in the test suite (Closes: #533976). * debian/rules: trigger network tests with DEB_MAINTAINER_MODE. * debian/control: - Build-depend on perl-modules >= 5.10.1 to have ExtUtils::Manifest 1.52 or higher, and on libtest-pod-perl. - Added liblist-moreutils-perl, libspreadsheet-writeexcel-perl, libsvg-perl, and libxml-simple-perl, libdbd-pg-perl, libdbd-mysql-perl, libdbd-sqlite3-perl to build and package dependencies (needed by some components of Bioperl, and therefore for the tests). -- Charles Plessy Wed, 30 Sep 2009 18:56:42 +0900 bioperl (1.6.0-3) unstable; urgency=low [ David Paleino ] * Removed myself from Uploaders [ Charles Plessy ] * debian/control: - Added libdata-stag-perl in bioperl’s Depends field, since it is required in Build.PL. - Added libxml-simple-perl in bioperl’s Recommends and Build-Depends fields, since they are listed in DEPENDENCIES. - Incremented Standards-Version to reflect conformance with Policy 3.8.3 (no changes needed). * Collected some informations in debian/upstream-metadata.yaml. -- Charles Plessy Fri, 18 Sep 2009 20:23:51 +0900 bioperl (1.6.0-2ubuntu1) karmic; urgency=low * disable tests, they produce a FTBFS trying to access the network during run. - Debian report: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=533976 - Upstream report: http://bugzilla.open-bio.org/show_bug.cgi?id=2861 -- Andreas Moog Tue, 04 Aug 2009 00:13:02 +0200 bioperl (1.6.0-2) unstable; urgency=low * Removed patch system (not used): - removed instructions in debian/rules; - removed quilt from Build-Depends in debian/control. * Re-enabled tests: - uncommented test command in debian/rules; - uncommented previously missing build-dependencies in debian/control. - Re-enabled tests and uncommented build-dependencies accordingly. * Removed libmodule-build-perl and libtest-harness-perl from Build-Depends-Indep (provided by perl-modules). * Better cleaning of empty directories using find -type d -empty -delete instead of rmdir in debian/rules (LP: #324001). -- Charles Plessy Tue, 10 Mar 2009 07:19:11 +0100 bioperl (1.6.0-1) experimental; urgency=low [ Charles Plessy ] * debian/control - Updated dependencies according to the new upstream release. - Added the CPAN dependencies of BioPerl to Build-Depends-Indep in order to run the tests at build time. - Added bioperl-run to the recommended packages. - Updated my email address. - Uses Debhelper 7 (debian/compat modified accordingly). * debian/patches: removed as not needed (no downloads by default). * debian/rules: - Uses Build.PL instead of Makefile.PL. - Tests disabled for the experimental upload: not all dependencies are available yet. * debian/README.{Debian,source}: removed as not needed anymore * debian/watch: BioPerl is now mixed case. [ David Paleino ] * New upstream stable release: - fixes Bio::AlignIO::next_aln bug (Closes: #266921). - New modules, deprecated modules,… please consult Upstream documents in /usr/share/doc/bioperl. * debian/control: - fields values rewrapped to easily spot diffs in commit mails - dropped B-D-I versioning on perl, since Etch already has a greater version - Standards-Version bumped to 3.8.0 (no changes needed). -- Charles Plessy Mon, 26 Jan 2009 12:58:28 +0900 bioperl (1.5.2.102-3) unstable; urgency=low * debian/control: - Removed MIA Matt Hope (dopey) from the Uploaders field. Thank you for your work, Matt. I hope you are doing well. - Downgraded some recommended package to the 'Suggests' priority, according to the following discussion on Upstream's mail list. http://bioperl.org/pipermail/bioperl-l/2008-March/027379.html (Closes: #448890) * debian/copyright converted to machine-readable format. -- Charles Plessy Tue, 18 Mar 2008 14:44:57 +0900 bioperl (1.5.2.102-2) unstable; urgency=low [ Steffen Moeller ] * Added reference to libsvg-graph-perl (Closes: #342475). [ Nelson A. de Oliveira ] * debian/control: - Removed the XS- prefix from Vcs-Browser and Vcs-Svn - Moved debhelper and quilt from Build-Depends-Indep to Build-Depends * Updated debian/copyright [ David Paleino ] * debian/control: - updated Recommends (libpostscript-textblock-perl won't exist - the package will be named libpostscript-perl) - fields wrapped at around 80 columns - added myself to Uploaders - added libio-string-perl to Build-Depends-Indep (Closes: #453923) - fixed Vcs-* fields - removed XS- from DM-Upload-Allowed * debian/changelog: - fixing incorrect first line (leading tab) * debian/rules updated * debian/dirs removed (passing arguments to dh_installdirs directly) -- David Paleino Wed, 06 Feb 2008 12:01:15 +0100 bioperl (1.5.2.102-1) unstable; urgency=low * Developer release. * Upgraded source package to debhelper 5 and standards-version 3.7.2. * Added libmodule-build-perl and libtest-harness-perl to build-depends-indep. * Disabled automatic CPAN download. * Using quilt instead of .diff.gz to manage modifications. * Updated Recommends list for the binary package. * Moved the "production-quality" scripts to /usr/bin/. * New maintainer: Debian-Med packaging team mailing list. * New uploaders: Charles Plessy and Steffen Moeller. * Updated Depends, Recommends and Suggests. * Imported in Debian-Med's SVN repository on Alioth. * Executing the regression tests during package building. * Moved the Homepage: field out from the package's description. * Updated watch file. -- Charles Plessy Fri, 21 Sep 2007 22:52:22 +0900 bioperl (1.4-1) unstable; urgency=low * New upstream release * Examples and working code are installed by default to usr/bin, this has been moved to usr/share/doc/bioperl/bin -- Matt Hope Sun, 18 Apr 2004 14:24:11 +1000 bioperl (1.2.1-2) unstable; urgency=low * Updated dependencies to libgd-gd2-perl (Closes: Bug#192210) * Same maintainer, different email address -- Matt Hope Mon, 30 Jun 2003 23:40:59 +1000 bioperl (1.2.1-1) unstable; urgency=low * New upstream release * Added more Depends/Recommends. * Added Depend: libio-string-perl (Closes: Bug#188395) -- Matt Hope Sat, 3 May 2003 01:21:54 +1000 bioperl (1.2-1) unstable; urgency=low * New upstream release -- Matt Hope Fri, 25 Apr 2003 12:30:10 +1000 bioperl (1.0.2-1) unstable; urgency=low * *Another* new upstream release. -- Matt Hope Wed, 17 Jul 2002 09:58:09 +1000 bioperl (1.0.1-1) unstable; urgency=low * New upstream release -- Matt Hope Sat, 29 Jun 2002 22:35:08 +1000 bioperl (1.0-1) unstable; urgency=low * New upstream release -- Matt Hope Wed, 20 Mar 2002 01:16:30 +1100 bioperl (0.7.2-1) unstable; urgency=low * New upstream release. * Adopted by new maintainer; closes: #100208 * Fixed lintian errors. -- Matt Hope Thu, 22 Nov 2001 19:31:26 +1100 bioperl (0.7.1-1) unstable; urgency=low * Maintainer set to Debian QA Group . * New upstream release. -- Adrian Bunk Fri, 24 Aug 2001 20:47:57 +0200 bioperl (0.7.0-1) unstable; urgency=low * New upstream release; closes: #44245 -- Dr. Guenter Bechly Sat, 5 May 2001 18:35:44 +0200 bioperl (0.05.1-3) unstable; urgency=low * Fixed compliance with perl policy; closes: #95880, #95418 -- Dr. Guenter Bechly Tue, 1 May 2001 08:13:09 +0200 bioperl (0.05.1-2) unstable; urgency=low * Adopted by new maintainer; closes: #92806 * Updated to latest standards version and added Build-Depends (changed control, copyright, dirs, docs, and rules); closes: #70154, #91121, #91397 * Fixed some lintian errors in rules. * Moved package to section non-free/science, because it is a tool that is exclusively useful for molecular biologists. -- Dr. Guenter Bechly Fri, 20 Apr 2001 19:48:05 +0200 bioperl (0.05.1-1) unstable; urgency=low * Complies with the new Perl policy. Closes #40564 * New upstream release -- Stephane Bortzmeyer Wed, 7 Jul 1999 14:49:16 +0200 bioperl (0.05-1) unstable; urgency=low * Initial Release. -- Stephane Bortzmeyer Wed, 19 May 1999 11:35:30 +0200