cd-hit (4.8.1-4) unstable; urgency=medium * d/watch: fix broken link to github * d/control: add myself to uploaders * d/t/run-unit-test: disable memory limits in tests (Closes: #992052) * Standards-Version: 4.6.0 (routine-update) -- Étienne Mollier Fri, 20 Aug 2021 10:39:56 +0200 cd-hit (4.8.1-3) unstable; urgency=medium * Fix Homepage Closes: #975385 * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Update watch file format version to 4. * Set upstream metadata fields: Bug-Database, Bug-Submit. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). -- Andreas Tille Sat, 21 Nov 2020 20:27:41 +0100 cd-hit (4.8.1-2) unstable; urgency=medium [ Helmut Grohne ] * Fix FTCBFS: Makefile expects a C++ compiler in $CC. (Closes: #932652) -- Andreas Tille Mon, 22 Jul 2019 00:42:22 +0200 cd-hit (4.8.1-1) unstable; urgency=medium [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.4.0 * Remove trailing whitespace in debian/rules * Do not parse d/changelog * Build-Depends: zlib1g-dev -- Andreas Tille Fri, 19 Jul 2019 19:34:25 +0200 cd-hit (4.6.8-2) unstable; urgency=medium * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 -- Andreas Tille Wed, 19 Sep 2018 14:47:50 +0200 cd-hit (4.6.8-1) unstable; urgency=medium * Team upload. * New upstream release. * Make build reproducible, thanks to Chris Lamb for the patch. Closes: #866330 -- Sascha Steinbiss Sat, 01 Jul 2017 10:43:07 +0200 cd-hit (4.6.7-1) unstable; urgency=medium * New upstream version - cd-hit-est and cd-hit-est-2d now can cluster paired end (PE) reads. - user can select sub-sequence from the beginning of the sequences for clustering. - psi-cd-hit.pl can work with blast+. - output cluster file can be sorted by cluster size, in addition to cluster length, which is still the default - output fasta file can be sorted by cluster size. * upstream/metadata: Added RRID * upstream/edam: Crude first entry * Team upload. -- Steffen Moeller Wed, 14 Jun 2017 15:55:31 +0200 cd-hit (4.6.6-2) unstable; urgency=medium [ Canberk Koç ] * Team upload. * Autopkgtest added [ Andreas Tille ] * Install originally named tools (including '-' to /usr/bin) -- Canberk Koç Sun, 14 Aug 2016 14:49:02 +0300 cd-hit (4.6.6-1) unstable; urgency=medium * New upstream version * Moved from SVN to Git -- Andreas Tille Wed, 03 Aug 2016 22:20:07 +0200 cd-hit (4.6.5-2) unstable; urgency=medium * Remove links to scripts that were removed in this version Closes: #825582 * cme fix dpkg-control * Better hardening -- Andreas Tille Sat, 28 May 2016 09:24:04 +0200 cd-hit (4.6.5-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control -- Andreas Tille Wed, 09 Mar 2016 21:47:21 +0100 cd-hit (4.6.4-1) unstable; urgency=medium * New upstream version * Adapted d/watch to move from google code to Github * Remove redundant remark from author about LaTeX source of doc * cme fix dpkg-control * Update debian/copyright * Some tools do not generate a help2man output any more -- Andreas Tille Fri, 22 Jan 2016 15:31:20 +0100 cd-hit (4.6.1-2012-08-27-2) unstable; urgency=low * Take over changes from BioLinux -- Andreas Tille Thu, 15 Aug 2013 21:36:49 +0200 cd-hit (4.6.1-2012-08-27-1biolinux1) precise; urgency=low * Rebuild for Precice * Add new cdhit-454 to /usr/bin, including help2man manpage * Remove dependency on openmpi, as cd-hit doesn't use it at all. (It uses the -fopenmp compiler flag; maybe there was some confusion?) -- Tim Booth Thu, 15 Aug 2013 17:00:41 +0100 cd-hit (4.6.1-2012-08-27-1) unstable; urgency=low * New upstream version (adapted patches) * debian/control: - cme fix dpkg-control - use anonscm in Vcs fields -- Andreas Tille Sun, 11 Aug 2013 10:51:30 +0200 cd-hit (4.6-2012-04-25-1) unstable; urgency=low * New upstream version incorporating the previous patches as well as the LaTeX source of the documentation * debian/patches/use-dpkg-buildflags.patch: Make sure hardening flags will really propagate * debian/{control,rules}: Use mpi version of cd-hit * README.Debian: Tell users that we are using mpi and they should ask for an alternative if needed * debian/*.1, debian/manpages: Deleted in favour of autogenerated manpages using help2man; Remark: the manually edited pages were slightly better regarding "SEE ALSO" and "AUTHORS" sections but it is better to auto-generate the pages to stay with changes of future versions * debian/rules: Use help2man 2 create manpages whereever possible * debian/patches/enable_help2man.patch: Fix some minor issues to get less error output in man pages -- Andreas Tille Thu, 26 Apr 2012 07:54:23 +0200 cd-hit (4.5.8-2012-03-24-1) unstable; urgency=low [ Charles Plessy ] * renamed debian/upstream-metadata.yaml to debian/upstream [ Andreas Tille ] * New upstream version * debian/watch: Fixed to reflect the change on code.google.com * debian/control: Standards-Version: 3.9.3 (no changes needed) * debian/copyright: Fixed DEP5 and verified using cme fix dpkg-copyright * debian/patches/gcc-4.7.patch: Enable building with g++-4.7 Closes: #667134 * debian/upstream: - use BibTeX format to specify author - Move DOI+PMID to References - Differentiate between URl and eprint * debhelper 9 (control+compat) -- Andreas Tille Sun, 22 Apr 2012 18:06:41 +0200 cd-hit (4.5.7-1) unstable; urgency=low * Initial release (Closes: #652074) * This package is recommended by the package qiime and thus it also Closes: #651983 -- Andreas Tille Wed, 14 Dec 2011 14:39:32 +0100