debian-science (1.14.3ubuntu1) kinetic; urgency=low * Merge from Debian unstable. Remaining changes: - Remove all polybori binary packages from Recommends, Suggests and the mathematics-dev tasks as those no longer exist in Ubuntu. * Dropped changes, no longer needed: - Update libsdformat4 to libsdformat6. -- Steve Langasek Sat, 13 Aug 2022 01:14:12 -0700 debian-science (1.14.3) unstable; urgency=medium [ Andreas Tille ] * Re-enable packages that were portet to Python3 * Build-Depends-Indep: blends-dev (>= 0.7.5~) Closes: #1011982 * Build-Depends: debhelper-compat (= 13) * Standards-Version: 4.6.1 * Replace vtk7 by vtk9 [ Antonio Valentino ] * Changes in metapackage dependencies - numericalcomputations added: Recommends: python3-resampy [ Debian Janitor ] * Trim trailing whitespace. * Use secure copyright file specification URI. * Bump debhelper dependency to >= 13, since that's what is used in debian/compat. * Set debhelper-compat version in Build-Depends. * start of automatic changelog entry * * Changes in metapackage dependencies -science-chemistry added: Recommends: python3-openbabel -science-dataacquisition added: Recommends: python3-sardana -science-financial added: Recommends: python3-stopt, libstopt-dev -science-imageanalysis-dev added: Recommends: python3-vigra -science-machine-learning added: Recommends: python3-vigra Suggests: libxgboost-predictor-java -science-mathematics added: Recommends: phcpack, libjgrapht-java Suggests: libspectra-dev -science-mathematics-dev added: Recommends: python3-stopt, libstopt-dev Suggests: python3-numpy-groupies removed: Suggests: python-numpy-groupies -science-meteorology added: Recommends: python3-cfgrib removed: Recommends: python-cfgrib -science-neuroscience-cognitive added: Suggests: python-mvpa2 -science-neuroscience-modeling added: Suggests: python3-pynn -science-numericalcomputation added: Recommends: python3-resampy, python3-csa Suggests: python3-stopt, libstopt-dev -science-robotics added: Suggests: vtk9 removed: Suggests: vtk7 -science-robotics-dev added: Recommends: libignition-fuel-tools-dev, libsdformat-dev, libignition-math-dev, ignition-tools, libgazebo-dev, libignition-utils-dev, libdart-dev, libignition-plugin-dev removed: Recommends: libgazebo9-dev, libignition-math2-dev, libignition-fuel-tools1-dev, libkido-dev, libignition-math4-dev, libsdformat4-dev -science-simulations added: Recommends: libdart-dev, gazebo removed: Recommends: gazebo9 -science-statistics added: Recommends: libdistlib-java -science-viewing added: Suggests: python3-vtk9, libvtk9-qt-dev, vtk9-examples, libvtk9-dev, libvtk9-java removed: Suggests: libvtk7-java, libvtk7-dev, libvtk7-qt-dev, python3-vtk7, vtk7-examples, tcl-vtk7 -science-viewing-dev added: Recommends: python3-vtk9, libvtk9-qt-dev, vtk9-examples, libvtk9-dev, libvtk9-java removed: Recommends: libvtk7-java, libvtk7-dev, libvtk7-qt-dev, python3-vtk7, vtk7-examples, tcl-vtk7 -- Andreas Tille Fri, 22 Jul 2022 10:03:20 +0200 debian-science (1.14.2ubuntu1) impish; urgency=low * Merge from Debian unstable. Remaining changes: - Update libsdformat4 to libsdformat6. - Remove all polybori binary packages from Recommends, Suggests and the mathematics-dev tasks as those no longer exist in Ubuntu. -- Steve Langasek Wed, 12 May 2021 12:29:08 -0700 debian-science (1.14.2) unstable; urgency=medium * Re-render metapackages according the package pool in bullseye * start of automatic changelog entry * * Changes in metapackage dependencies -science-dataacquisition-dev added: Recommends: libopenrefine-vicino-java, libopenrefine-arithcode-java -science-simulations added: Recommends: pysph-viewer -science-workflow added: Recommends: python3-nipype, python3-wdlparse Suggests: cwlformat -- Andreas Tille Mon, 10 May 2021 15:27:28 +0200 debian-science (1.14.1ubuntu1) hirsute; urgency=low * Merge from Debian unstable. Remaining changes: - Update libsdformat4 to libsdformat6. - Remove all polybori binary packages from Recommends, Suggests and the mathematics-dev tasks as those no longer exist in Ubuntu. -- Steve Langasek Mon, 22 Mar 2021 16:41:39 -0700 debian-science (1.14.1) unstable; urgency=medium * Source-only upload -- Andreas Tille Tue, 09 Mar 2021 06:29:09 +0100 debian-science (1.14) unstable; urgency=medium [ Andreas Tille ] * debhelper-compat (= 13) * Standards-Version: 4.5.0 * Rename debian/NEWS.Debian to debian/NEWS [ Yaroslav Halchenko ] * New task datamanagement * start of automatic changelog entry * * Changes in metapackage dependencies -science-dataacquisition added: Suggests: python3-streamz -science-dataacquisition-dev added: Recommends: python3-intake -science-engineering-dev added: Recommends: python3-pyode -science-machine-learning added: Recommends: python3-mlpy, streamlit -science-mathematics added: Recommends: coinor-csdp, topcom, macaulay2, qepcad -science-mathematics-dev added: Recommends: libsaclib-dev, libmps-dev Suggests: python-numpy-groupies -science-meteorology added: Recommends: xygrib, harp, python-cfgrib removed: Recommends: zygrib -science-numericalcomputation added: Recommends: ipython3, libsundials-dev Suggests: python3-compyle, python3-cyarray removed: Recommends: ipython Suggests: libsundials-serial-dev -science-physics-dev added: Recommends: python3-pyode -science-robotics added: Recommends: joint-state-publisher, rosdiagnostic Suggests: joint-state-publisher-gui removed: Recommends: orocos-bfl, orocos-kdl, pcl -science-robotics-dev added: Recommends: librosconsole-dev, libkdl-parser-dev, librobottestingframework-dev * New metapackages: -science-datamanagement -- Andreas Tille Wed, 24 Feb 2021 18:09:57 +0100 debian-science (1.13ubuntu1) groovy; urgency=low * Merge from Debian unstable. Remaining changes: - Update libsdformat4 to libsdformat6. - Remove all polybori binary packages from Recommends, Suggests and the mathematics-dev tasks as those no longer exist in Ubuntu. -- Steve Langasek Fri, 01 May 2020 15:45:23 -0700 debian-science (1.13) unstable; urgency=medium * tasks/numericalcomputation - switch to ipython3; Closes: #935927 -- Sandro Tosi Fri, 06 Mar 2020 13:27:15 -0500 debian-science (1.12ubuntu1) focal; urgency=low * Merge from Debian unstable. Remaining changes: - Update libsdformat4 to libsdformat6. - Remove all polybori binary packages from Recommends, Suggests and the mathematics-dev tasks as those no longer exist in Ubuntu. -- Steve Langasek Sat, 01 Feb 2020 12:54:10 -0800 debian-science (1.12) unstable; urgency=medium [ Stuart Prescott ] * Team upload. * Further Python 3 updates. [ Andreas Tille ] * Standards-Version: 4.4.0 -- Stuart Prescott Tue, 21 Jan 2020 00:59:36 +1100 debian-science (1.11ubuntu1) focal; urgency=low * Merge from Debian unstable. Remaining changes: - Update libsdformat4 to libsdformat6. - Remove all polybori binary packages from Recommends, Suggests and the mathematics-dev tasks as those no longer exist in Ubuntu. * Dropped changes, included in Debian: - Drop python-cdo dependency, it's no longer build for python2. - Update gazebo7 to gazebo9. - Don't recommend removed python-sardana. * Dropped changes, no longer required: - Don't recommend ghkl. -- Steve Langasek Wed, 30 Oct 2019 21:24:55 -0700 debian-science (1.11) unstable; urgency=medium [ Graham Inggs ] * tasks/nanoscale-physics: python-ase is now ase [ Sandro Tosi ] * tasks/engineering-dev - Recommends libalberta-dev instead of libalberta2-dev; Closes: #881612 * tasks/nanoscale-physics-dev - Recommends libsymspg-dev instead of spglib; Closes; #901047 * Drop science-astronomy transitional package; Closes: #939201 * Drop science-astronomy-dev transitional package; Closes: #939202 * Switch every python dependency to Python3 (removing packages no longer available, commenting out python2-only packages); Closes: #935927 * start of automatic changelog entry * * Changes in metapackage dependencies -science-chemistry removed: Recommends: python-mzml, python-mmtk, python-openbabel -science-dataacquisition added: Recommends: python3-pyvisa Suggests: python3-taurus, python3-pytango removed: Recommends: python-sardana, python-visa Suggests: python-taurus, python-pytango -science-dataacquisition-dev added: Recommends: python3-guidata, python3-pygetdata removed: Recommends: python-xrayutilities, python3-pygetdata | python-pygetdata, python3-guidata | python-guidata -science-distributedcomputing added: Recommends: python3-scoop Suggests: python3-mpi4py removed: Recommends: python-scoop, python-mpi Suggests: python-mpi4py -science-economics added: Recommends: r-cran-rdbnomics, python3-statsmodels, python3-pandasdmx Suggests: elpa-ess removed: Recommends: python-statsmodels, python-quantecon, python-pandasdmx Suggests: ess -science-electrophysiology added: Suggests: python3-neo removed: Suggests: python-spykeutils, python-neo, python-neuroshare -science-engineering added: Recommends: python3-dolfin, python3-fiat, python3-silo, python3-escript | python3-escript-mpi, python3-admesh, python3-openturns removed: Recommends: python-silo, python-admesh | python3-admesh, python-fiat, python-openturns, python-escript | python3-escript | python-escript-mpi | python3-escript-mpi, python-dolfin -science-engineering-dev added: Recommends: python3-pynfft, libalberta-dev, python3-netcdf4 removed: Recommends: libalberta2-dev, python-collada, python3-pynfft | python-pynfft, python-netcdf -science-geography added: Recommends: python3-cartopy, python3-mapnik, python3-mapscript Suggests: python3-pyepsg removed: Recommends: merkaartor, ruby-mapscript, imposm, python3-cartopy | python-cartopy, python-mapscript, josm-plugins, thuban, python-mapnik Suggests: python3-pyepsg | python-pyepsg -science-highenergy-physics removed: Recommends: python-rivet, python-lhapdf -science-imageanalysis-dev added: Recommends: python3-imageio removed: Recommends: python3-imageio | python-imageio, python-vigra -science-linguistics added: Recommends: python3-pynlpl Suggests: python3-nltk, python3-snowballstemmer removed: Recommends: python3-pynlpl | python-pynlpl Suggests: python-timbl, python3-snowballstemmer | python-snowballstemmer, python3-nltk | python-nltk -science-machine-learning added: Recommends: python3-opencv, python3-statsmodels, python3-mdp removed: Recommends: python-mlpy, python-mvpa2, python-statsmodels, python-pebl, python-vigra, python-pymc, python-mdp, python-orange, python-pyevolve, python-genetic, python-opencv -science-mathematics added: Recommends: python3-dolfin, python3-ffc, python3-minieigen, python3-deap, python3-openturns, python3-ufl, python3-sagenb-export removed: Recommends: python-sagenb-export | python3-sagenb-export, python-ufl, python-deap, python-openturns, python-sagenb, python-ffc, python-dolfin, python-minieigen -science-mathematics-dev added: Recommends: python3-dolfin, python3-dtcwt, python3-linop, python3-numpy, python3-ffc, python3-ufl, python3-slepc4py, python3-pyviennacl, python3-numexpr, python3-petsc4py, python3-openturns, python3-pynfft removed: Recommends: python-slepc4py, python3-pynfft | python-pynfft, python3-numexpr | python-numexpr, python3-dtcwt | python-dtcwt, python-polybori, python3-linop | python-linop, python-ufl, python3-numpy | python-numpy, python3-pyviennacl | python-pyviennacl, python-openturns, python-openopt, python-cylp, python-glpk, python-ffc, python-petsc4py, python-dolfin -science-meteorology added: Recommends: python3-grib Suggests: python3-openturns removed: Recommends: python-sphere, aweather, python-gsw, python-cmor, python-cdo, python-netcdf, python-ferret, python-drslib, python-metaconfig, python-grib, python-iapws Suggests: python-openturns, python-dap -science-meteorology-dev added: Recommends: python3-openturns, python3-ulmo Suggests: python3-coards removed: Recommends: python-openturns, python3-ulmo | python-ulmo Suggests: python3-coards | python-coards -science-nanoscale-physics added: Recommends: python3-sympy, python3-lmfit, ase, python3-scipy Suggests: python3-pygraphviz removed: Recommends: python-scitools, python-scipy, python-sympy, python-elemental, python-scientific, python3-lmfit | python-lmfit, python-ase Suggests: python-pygraphviz -science-nanoscale-physics-dev added: Recommends: libsymspg-dev, python3-fabio Suggests: python3-h5py, python3-netcdf4 removed: Recommends: python-xrayutilities, spglib, python-fabio Suggests: python-h5py, python-netcdf -science-neuroscience-cognitive added: Recommends: python3-statsmodels, python3-pydicom, python3-nibabel removed: Recommends: python-mvpa2, python-statsmodels, python-nibabel, python-nipy, python-nitime, python-pypsignifit, python-dipy, python-nipype, python-pyxnat, python-dicom, python-pyepl -science-neuroscience-modeling removed: Recommends: python-brian Suggests: python-pynn -science-numericalcomputation added: Recommends: python3-lmfit, python3-bitstring, python3-pysph, python3-sparse, python3-numpy, python3-tables, python3-escript | python3-escript-mpi, python3-theano, python3-deap, python3-arrayfire, python3-matplotlib, python3-scipy, python3-woo, python3-guiqwt removed: Recommends: python-sfepy, python3-arrayfire | python-arrayfire, python3-scipy | python-scipy, python3-sparse | python-sparse, python-gts, python3-deap | python-deap, python3-theano | python-theano, python3-lmfit | python-lmfit, python3-tables | python-tables, python-demgengeo, python-csa, python3-matplotlib | python-matplotlib, python3-woo | python-woo, python-pysph, python3-guiqwt | python-guiqwt, python-scitools, python-escript | python3-escript | python-escript-mpi | python3-escript-mpi, python3-bitstring | python-bitstring, python3-numpy | python-numpy Suggests: python-sciscipy -science-physics added: Recommends: python3-sympy, python3-deap removed: Recommends: python-sympy, python-deap -science-physics-dev added: Recommends: python3-dolfin, python3-multipletau, libxray-scattering-perl, python3-quantities, libxray-spacegroup-perl, libxray-absorption-perl, python3-pynfft removed: Recommends: python-openctm, python3-pynfft | python-pynfft, python-quantities, python3-multipletau | python-multipletau, python-xrayutilities, python-dolfin -science-psychophysics removed: Recommends: python-pyoptical, python-pyepl Suggests: python-pyxid -science-robotics-dev added: Recommends: python3-comedilib removed: Recommends: python-comedilib -science-simulations added: Recommends: python3-deap, python3-escript | python3-escript-mpi, python3-woo, python3-pysph removed: Recommends: python-sfepy, python3-woo | python-woo, python-pysph, python-deap, python-escript | python3-escript | python-escript-mpi | python3-escript-mpi -science-statistics added: Recommends: python3-statsmodels, elpa-ess, python3-scipy, python3-openturns, python3-pandas removed: Recommends: python-pandas, python-statsmodels, python-scipy, python-openturns, ess, python-stats -science-tools added: Recommends: python3-hdf5storage, python3-pybind11, python3-h5py removed: Recommends: python3-h5py | python-h5py, python3-pybind11 | python-pybind11, python3-hdf5storage | python-hdf5storage Suggests: python-mrjob -science-viewing added: Recommends: python3-pyqtgraph, python3-seaborn, python3-guiqwt, python3-gnuplot Suggests: python3-matplotlib, python3-pivy removed: Recommends: python-gnuplot, python-pyqtgraph, python-guiqwt, python-scientific, python-seaborn Suggests: python-matplotlib, python-scitools, python-pivy -science-viewing-dev added: Recommends: python3-matplotlib-venn, python3-gnuplotlib, python3-plplot-qt, python3-gnuplot, python3-matplotlib, python3-pivy, python3-vispy removed: Recommends: python-gnuplot, python3-vispy | python-vispy, python-gnuplotlib, python-matplotlib, python-scitools, python-plplot-qt, python3-qwt | python-qwt, python3-matplotlib-venn | python-matplotlib-venn, python-scientific, python-pivy -science-workflow removed: Recommends: python-nipype -- Andreas Tille Tue, 01 Oct 2019 11:53:08 +0200 debian-science (1.10) unstable; urgency=medium * Re-render tasks with Buster release state * start of automatic changelog entry * * Changes in metapackage dependencies -science-mathematics added: Recommends: pyomo -- Andreas Tille Wed, 12 Jun 2019 16:52:00 +0200 debian-science (1.9) unstable; urgency=medium [ Ruben Undheim ] * Debian-Electronics is now a separate Debian Pure Blend [ Jelmer Vernooij ] * Use secure URI in Homepage field. [ Andreas Tille ] * Standards-Version: 4.3.0 * debhelper (>= 12~) * start of automatic changelog entry * * Changes in metapackage dependencies -science-chemistry added: Recommends: msxpertsuite Suggests: python3-periodictable, libschroedinger-coordgenlibs-dev removed: Recommends: massxpert -science-dataacquisition added: Recommends: csvkit, lxi-tools, clickhouse-tools Suggests: binoculars -science-dataacquisition-dev added: Recommends: python3-csvkit, python3-pymeasure, liblxi-dev, python3-aws-xray-sdk -science-distributedcomputing removed: Recommends: torque-server, torque-common -science-economics added: Suggests: x13as removed: Recommends: x13-arima-seats -science-engineering added: Recommends: lxi-tools -science-engineering-dev added: Recommends: libcoin-dev, python3-pygalmesh, liblxi-dev, python3-fluids removed: Recommends: libnetcdf-java, libcoin80-dev, libmesh-dev -science-geography added: Recommends: grace, sac2mseed, python-mapscript, ruby-mapscript Suggests: libmseed-dev removed: Recommends: php5-mapscript Suggests: grace6 -science-highenergy-physics added: Recommends: neuron, sasview -science-highenergy-physics-dev added: Recommends: neuron-dev, python3-sasmodels, python3-neuron -science-imageanalysis removed: Suggests: scilab-sivp -science-linguistics added: Recommends: irstlm, spacy, python3-thinc Suggests: apertium-bel, apertium-oci, apertium-crh, apertium-rus, apertium-cat-srd, apertium-pol, apertium-crh-tur, apertium-separable, python3-streamparser, apertium-tur, apertium-szl, apertium-ukr, apertium-bel-rus -science-machine-learning added: Recommends: python3-lasagne, lua-torch-image, lua-torch-optim, python3-thinc, lua-torch-nngraph, r-cran-mlr, lua-torch-nn, r-cran-metrics, python3-amp, python3-keras, spacy, python3-sklearn, lua-torch-graph, lua-torch-trepl, lua-torch-xlua Suggests: libmkldnn-dev, libxsmm-dev, python3-hdmedians, libfclib-dev removed: Recommends: python-scikits-learn, lua-torch5 -science-mathematics added: Recommends: gap-sonata, cohomcalg, gap-design, gap-laguna, gap-factint, xcas, form, gap-toric, cryptominisat removed: Recommends: scilab-swt, scilab-sivp, scilab-plotlib -science-mathematics-dev added: Recommends: python3-gpyfft, python3-cvxopt, libcvector-dev, libbrial-dev, libmkl-full-dev, python3-optlang, libbraiding-dev, libcqrlib-dev, python3-cryptominisat, libxsmm-dev, python3-bumps, python3-asteval, libblis-dev, python3-brial, libgemmlowp-dev, python3-cypari2, libcombblas-dev, libflint-dev, libhomfly-dev, libprimesieve-dev Suggests: python3-msgpack-numpy removed: Recommends: libcvector2-dev, libcqrlib2-dev, libprimesieve6-dev, libmesh-dev -science-meteorology added: Recommends: libeccodes-tools, ncl-ncarg, coda removed: Recommends: ncl, libeccodes-api-tools -science-meteorology-dev added: Recommends: python3-gpyfft, python3-ulmo | python-ulmo, libncarg-bin, libcoda-dev, libcoda-java, python3-coda removed: Recommends: libcoarrays-bin -science-nanoscale-physics added: Recommends: binoculars, cod-tools, libssm-bin removed: Recommends: libfftw3-3, scilab-sivp, libxc -science-nanoscale-physics-dev added: Recommends: python3-gpyfft, libcexceptions-dev, python3-pycodcif, libcod-precision-perl, python3-periodictable, python3-binoculars, libccp4-dev removed: Recommends: crystfel-dev -science-neuroscience-modeling added: Recommends: neuron -science-numericalcomputation added: Recommends: psurface Suggests: python3-agatedbf, python3-agateexcel, python3-agatesql, libpsurface-dev removed: Recommends: scilab-plotlib, scilab-sivp Suggests: python3-agate-dbf, python3-agate-sql, python3-agate-excel -science-physics removed: Suggests: scilab-sivp -science-physics-dev added: Recommends: python3-gpyfft, python3-pygalmesh -science-presentation added: Recommends: texlive-latex-extra, dspdfviewer, texlive-publishers removed: Recommends: latex-beamer -science-psychophysics removed: Suggests: science-bci -science-robotics added: Recommends: gazebo9, ros-robot, ros-robot-state-publisher Suggests: libcoin-runtime, vtk7 removed: Recommends: gazebo7 Suggests: libcoin60-runtime, libvtk5.4 -science-robotics-dev added: Recommends: python3-catkin-lint, liborocos-kdl-dev, libignition-fuel-tools1-dev, ros-environment, libfcl-dev, libapriltag-dev, libgazebo9-dev, python3-tf2, liborocos-bfl-dev removed: Recommends: libgazebo7-dev -science-simulations added: Recommends: neuron, occt-draw, occt-misc, libkim-api-v2-models, gazebo9 removed: Recommends: gazebo7 -science-statistics added: Suggests: node-shiny-server-client -science-tools added: Recommends: python3-h5netcdf Suggests: python3-pydap removed: Recommends: python3-h5netcdf | python-h5netcdf Suggests: python3-pydap | python-pydap -science-typesetting added: Recommends: python3-pybtex-docutils, python3-sphinxcontrib.bibtex removed: Recommends: pybtex-docutils, sphinxcontrib-bibtex -science-viewing added: Recommends: geg, r-cran-sjplot Suggests: libcoin-dev, python3-vtk7, vtk7-examples, libsoqt520-dev, libvtk7-java, tcl-vtk7, libvtk7-dev, libvtk7-qt-dev removed: Suggests: libsoqt4-dev, libvtk5-qt4-dev, libvtk-java, libcoin80-dev, vtk-examples, libvtk5-dev, tcl-vtk, python-vtk -science-viewing-dev added: Recommends: libcoin-dev, python3-vtk7, vtk7-examples, libsoqt520-dev, python3-qwt3d-qt5, liborigin2-dev, libvtk7-java, python3-qwt, tcl-vtk7, libqglviewer-dev-qt5, libvtk7-dev, libqwtplot3d-qt5-dev, libvtk7-qt-dev Suggests: libcoin-dev removed: Recommends: python-vtk6, libsoqt4-dev, libvtk5-qt4-dev, libvtk-java, libcoin80-dev, vtk-examples, libqwtplot3d-qt4-dev, libvtk5-dev, tcl-vtk, python-vtk, python-qwt3d-qt4, libvtk6-java, libqglviewer-dev-qt5 | libqglviewer-dev-qt4, libvtk6-dev -science-workflow added: Recommends: toil Suggests: libbenchmark-tools removed: Recommends: python-toil * Removed metapackages: - science-electronics -- Andreas Tille Thu, 07 Feb 2019 21:38:42 +0100 debian-science (1.8) unstable; urgency=medium [ Drew Parsons ] * Changes in metapackage dependencies -nanoscale-physics removed: Recommends: libblacs-mpi1, libscalapack-mpi1 -nanoscale-physics-dev removed: Recommends: libblacs-mpi-dev [ Andreas Tille ] * Moved to Salsa * Since blends-dev now permits "real" Depends it is safer to say exactly what we mean - thus turning all "Depends" into "Recommends" explicitly * Bump versioned Build-Depends-Indep to: blends-dev (>= 0.7~) * d/compat: 9 * Priority: optional * Standards-Version: 4.1.5 * Regenerate dependencies using blends-dev -- Andreas Tille Wed, 18 Jul 2018 16:09:41 +0200 debian-science (1.7ubuntu3) bionic; urgency=medium * debian/control, tasks/*: - Drop python-cdo dependency, it's no longer build for python2. - Update gazebo7 to gazebo9 and libsdformat4 to libsdformat6. -- Adam Conrad Sat, 24 Feb 2018 12:50:13 -0700 debian-science (1.7ubuntu2) bionic; urgency=medium * debian/control, tasks/mathematics-dev: - Remove all polybori binary packages from Recommends, Suggests and the mathematics-dev tasks as those no longer exist in Ubuntu. -- Łukasz 'sil2100' Zemczak Fri, 26 Jan 2018 16:25:09 +0100 debian-science (1.7ubuntu1) bionic; urgency=medium * Sync with Debian. Remaining changes: - Don't recommend ghkl, python-sardana since they have been removed. -- Jeremy Bicha Sat, 28 Oct 2017 19:02:29 -0400 debian-science (1.7) unstable; urgency=medium * Fix typo in astro-virtual-observatory and again depend on it * Remove inactive Uploaders, add Ole Streicher * start of automatic changelog entry * * Changes in metapackage dependencies -science-viewing-dev added: Depends: python3-vispy | python-vispy, libgl2ps-dev, python3-qwt | python-qwt, libqglviewer-dev-qt5 | libqglviewer-dev-qt4, libgts-dev Suggests: libcollada-dom2.4-dp-dev -science-robotics added: Depends: ros-opencv-apps -science-engineering added: Depends: python-admesh | python3-admesh, python-dolfin, fenics, openmeca, calculix-cgx Suggests: calculix-cgx-examples, calculix-ccx-test, calculix-ccx-doc -science-simulations added: Depends: calculix-cgx Suggests: calculix-cgx-examples, calculix-ccx-test, calculix-ccx-doc -science-tools added: Depends: python3-h5netcdf | python-h5netcdf Suggests: python3-pweave -science-linguistics added: Depends: r-cran-lexrankr, r-cran-snowballc Suggests: r-cran-nlp, python3-snowballstemmer | python-snowballstemmer -science-dataacquisition added: Depends: libgetdata-tools -science-statistics added: Depends: r-cran-bradleyterry2, datamash, r-cran-corpcor, pspp Suggests: r-cran-brglm, r-cran-gnm -science-numericalcomputation added: Depends: xtensor-dev, calculix-cgx, toulbar2, xtensor-python-dev, coinor-cbc, python3-sparse | python-sparse Suggests: python3-dbfread, python3-spyder-line-profiler, python3-spyder-unittest, python3-agate-dbf, python3-spyder-memory-profiler, python3-leather, calculix-cgx-examples, python3-agate-excel, python3-agate-sql, coinor-libcoinmp-dev, calculix-ccx-test, calculix-ccx-doc, evolver-ogl | evolver-nox, python3-agate -science-machine-learning added: Depends: toulbar2 -science-mathematics-dev added: Depends: libp4est-dev, fenics, slepc-dev, libdeal.ii-dev, coinor-libcoinmp-dev, python-slepc4py, libjgrapht0.8-java | libjgrapht0.6-java, jel-java, trilinos-all-dev, python-petsc4py Suggests: libtrilinos-dev removed: Depends: dolfin-dev, libtrilinos-dev, libslepc3.4.2-dev -science-mathematics added: Depends: python-dolfin, toulbar2, python-ufl, coinor-cbc Recommends: python-sagenb-export | python3-sagenb-export, python-sagenb Suggests: evolver-ogl | evolver-nox removed: Depends: polybori, polybori-gui, sfc, dolfin-bin -science-electronics added: Depends: dfcgen-gtk -science-engineering-dev added: Depends: libp4est-dev, trilinos-all-dev removed: Suggests: calculix-ccx-test, calculix-ccx-doc -science-viewing added: Depends: giza-dev, gfsview Suggests: libgts-bin -science-physics-dev added: Depends: libp4est-dev, python-dolfin, fenics, trilinos-all-dev, libdeal.ii-dev -science-dataacquisition-dev added: Depends: libgetdata-perl, python3-guidata | python-guidata, libgetdata-dev, python3-pygetdata | python-pygetdata Suggests: r-cran-mi, r-cran-ncdf4 -science-physics added: Depends: toulbar2 Suggests: evolver-ogl | evolver-nox -science-imageanalysis-dev added: Suggests: lib3ds-dev -science-logic added: Depends: coinor-symphony, toulbar2 Suggests: coinor-libcoinmp-dev -- Ole Streicher Tue, 24 Jan 2017 17:52:54 +0100 debian-science (1.6) unstable; urgency=medium [ Alastair McKinstry ] * Update meteorlogy, meteorology-dev tasks, changes in jessie -> stretch [ Ole Streicher ] * Disable default installation for special science fields [ Andreas Tille ] * rebuild using blends-dev 0.6.95 * Depends to only Suggests: astro-virtualobservator [ Ralf Treinen ] * Drop package "confluence" from the electronics task * start of automatic changelog entry * * Changes in metapackage dependencies -science-economics added: Depends: r-cran-dynlm, python3-numpy | python-numpy, python3-pandas | python-pandas, r-cran-isocodes, python3-simpy | python-simpy, python3-scipy | python-scipy, r-cran-nleqslv, python3-matplotlib | python-matplotlib removed: Depends: python-simpy, python-matplotlib, python-numpy, python-pandas, python-scipy -science-robotics added: Depends: ros-perception, ros-desktop, ros-simulators, gazebo7, ros-desktop-full Suggests: gnuplot removed: Depends: roslang, python-roscreate, python-rosunit, ros-mk, rosbuild, python-rosmake, python-rosclean, gazebo5, rosbash Suggests: gnuplot | gnuplot5 -science-robotics-dev added: Depends: libignition-msgs-dev, libpcl-dev, ros-desktop-full-lisp-dev, ros-desktop-dev, ros-simulators-dev, ros-desktop-full-python-dev, libsdformat4-dev, ros-desktop-full-dev, ros-perception-dev, libgazebo7-dev, libkido-dev removed: Depends: libgazebo5-dev, libsdformat-dev -science-simulations added: Depends: openfoam, python-pysph, gazebo7, python-escript | python3-escript | python-escript-mpi | python3-escript-mpi removed: Depends: freefoam, pysph -science-viewing-dev added: Depends: libglm-dev, libforge-dev, libgli-dev, libslvs1-dev, libglbinding-dev, libglobjects-dev, python3-matplotlib-venn | python-matplotlib-venn, libgtkdatabox-dev removed: Depends: libgtkdatabox-0.9.2-0-dev -science-tools added: Depends: science-workflow, hdf-compass, python3-pybind11 | python-pybind11, python3-hdf5storage | python-hdf5storage, python3-h5py | python-h5py Suggests: python3-pydap | python-pydap removed: Depends: python-h5py | python3-h5py, cwltool, snakemake, pegasus-wms, python-hdf5storage | python3-hdf5storage -science-geography added: Depends: r-cran-fields, hydroffice.bag-tools, python3-cartopy | python-cartopy, r-cran-raster -science-linguistics added: Depends: hfst, lttoolbox, uctodata, python3-pynlpl | python-pynlpl, giella-sme, hfst-ospell Suggests: apertium-mk-en, apertium-en-gl, apertium-id-ms, r-cran-tm, apertium-eo-fr, apertium-isl, apertium-kaz-tat, apertium-srd, apertium-is-sv, apertium-spa, apertium-ca-it, apertium-urd, apertium-hbs-slv, apertium-hin, apertium-sme-nob, apertium-eu-en, apertium-es-ast, apertium-spa-arg, apertium-tat, apertium-eo-en, apertium-kaz, apertium-arg, apertium-ita, apertium-mk-bg, apertium-es-it, apertium-hbs-mkd, apertium-swe-nor, apertium-hbs-eng, apertium-srd-ita, python3-nltk | python-nltk, apertium-mlt-ara, apertium-isl-eng, apertium-hbs, apertium-urd-hin, apertium-arg-cat removed: Suggests: python-nltk, python3-nltk -science-statistics added: Depends: r-cran-modelmetrics, r-cran-lavaan, r-cran-sem, r-cran-qvcalc, r-cran-geepack, r-cran-ca, r-cran-gam, r-cran-randomfieldsutils, r-cran-glmnet, r-cran-raschsampler, r-cran-erm, r-cran-caret, r-cran-reshape2, r-cran-arm, r-cran-nmf, r-cran-goftest, r-cran-maptree, r-cran-ggplot2 Suggests: r-cran-minpack.lm, r-cran-luminescence, r-cran-princurve, r-cran-rngtools, r-cran-bbmle, r-cran-ellipse, r-cran-irlba, r-cran-mlmrev -science-imageanalysis removed: Depends: python-imageio -science-machine-learning added: Depends: torch-core-free, r-cran-mlbench, libmlpack-dev, caffe-cpu | caffe-cuda -science-mathematics-dev added: Depends: python3-pynfft | python-pynfft, python3-numpy | python-numpy, libprimesieve6-dev, python3-dtcwt | python-dtcwt, python3-pyoperators | python-pyoperators, libflint-arb-dev, cppad, python3-numexpr | python-numexpr, libsopt-dev, python3-pyviennacl | python-pyviennacl, librw-dev, python3-gimmik, python3-linop | python-linop Suggests: libdune-functions-dev, libdune-pdelab-dev, libcblas-dev, libdune-grid-glue-dev, sollya, libsollya-dev, libdune-typetree-dev, libdune-uggrid-dev removed: Depends: python-pyoperators | python3-pyoperators, python3-pyviennacl, ufc, python-fftw3 | python3-fftw3, python-dtcwt | python3-dtcwt, python-numpy, python-ufc, libprimesieve5-dev, python-pyfftw | python3-pyfftw, python-pynfft | python3-pynfft, python-linop | python3-linop, libsymmetrica-dev, python-pyviennacl, python-numexpr | python3-numexpr, python-ferari -science-mathematics added: Depends: sagemath-database-mutually-combinatorial-designs, flintqs, rubiks, maxima-sage, planarity Suggests: sagetex -science-electronics removed: Depends: confluence -science-numericalcomputation added: Depends: python3-numpy | python-numpy, pyzo, python3-arrayfire | python-arrayfire, python3-guiqwt | python-guiqwt, python-escript | python3-escript | python-escript-mpi | python3-escript-mpi, python-pysph, python3-tables | python-tables, python3-deap | python-deap, python3-bitstring | python-bitstring, python3-scipy | python-scipy, libppl-dev, libclsparse-dev, python3-matplotlib | python-matplotlib, python3-theano | python-theano, librsb-dev, python3-lmfit | python-lmfit Suggests: theano-doc, libcblas-dev, python3-bcolz removed: Depends: python-matplotlib, libcompute-dev, python-lmfit | python3-lmfit, python-numpy, python-scipy, python-deap, python-bitstring | python3-bitstring, python-guiqwt, python-arrayfire | python3-arrayfire, python-tables | python3-tables, pysph -science-typesetting added: Depends: pandoc-citeproc, r-cran-knitr, texmaker | kile | lyx | texmacs | auctex | vim-latexsuite | texstudio, sagetex, pandoc Suggests: r-cran-shape, r-cran-gridbase, r-cran-highr, r-cran-scatterd3 removed: Depends: texmacs, lyx, auctex Suggests: texmaker -science-engineering-dev added: Depends: python3-pynfft | python-pynfft Suggests: libgtkdatabox-dev removed: Depends: libfreefoam-dev, python-pynfft | python3-pynfft, python-fftw3 | python3-fftw3, syfi-dev Suggests: libgtkdatabox-0.9.2-0-dev -science-viewing added: Depends: rlplot, gnuplot, solvespace Suggests: r-cran-qqman, r-cran-shape removed: Depends: python-viper, python-matplotlib-venn | python3-matplotlib-venn, gnuplot | gnuplot5 -science-physics-dev added: Depends: python3-multipletau | python-multipletau, python3-pynfft | python-pynfft removed: Depends: python-pyfftw | python3-pyfftw, libfreefoam-dev, python-pynfft | python3-pynfft, python-fftw3 | python3-fftw3, python-multipletau | python3-multipletau -science-dataacquisition-dev added: Depends: liblog4tango-dev, libsdsl-dev, libtango-dev removed: Depends: liblog4tango5-dev, libtango8-dev -science-nanoscale-physics-dev added: Suggests: libcblas-dev -science-geometry added: Suggests: rubiks -science-physics added: Depends: pyfr removed: Depends: freefoam -science-meteorology added: Depends: python3-netcdf4, python-metaconfig, python3-gsw, python3-cdo, metview, python3-metaconfig, python-iapws, python3-iapws, cmor-tables, cdftools, flexpart, python-gsw, libeccodes-api-tools, python3-sphere, fcm, python3-drslib, python3-cmor, python3-eccodes, makedepf90, libemos-bin, flextra, python3-ferret, cylc, python-ferret, python-cdo Suggests: geonetwork removed: Depends: freefoam, libgrib-api-tools, visit, geonetwork, cmip5-cmor-tables -science-engineering added: Depends: openfoam, python-escript | python3-escript | python-escript-mpi | python3-escript-mpi, solvespace, scram removed: Depends: freefoam -science-nanoscale-physics added: Depends: gnuplot, python3-lmfit | python-lmfit removed: Depends: python-lmfit | python3-lmfit, gnuplot | gnuplot5 -science-imageanalysis-dev added: Depends: python3-imageio | python-imageio removed: Depends: python-imageio -science-logic added: Depends: z3, why3, why removed: Recommends: otter -science-chemistry added: Depends: openfoam removed: Depends: freefoam -science-meteorology-dev added: Depends: libeccodes-tools, libmagics++-dev, mpi-defaults-dev, libeccodes-dev, libcdi-dev, libcoarrays-bin, libcoarrays-dev, libaec-dev Suggests: python3-coards | python-coards, libcblas-dev, udunits-bin removed: Depends: libfreefoam-dev, libgrib-api-tools, libgrib-api-dev * New metapackages: -science-astronomy -science-astronomy-dev -- Andreas Tille Tue, 24 Jan 2017 11:05:32 +0100 debian-science (1.5) unstable; urgency=medium [ Ole Streicher ] * Replace astronomy and astronomy-dev packages with the metapackages from debian-astro * Recommend other science blends tasks in science-tasks * Push Standards-Version to 3.9.7 (No changes) [ Andreas Tille ] * Add new task imageanalysis-dev * Fix package description in engineering Closes: #730282 * Remove python-pyke from machine-learning Closes: #799284 * Use secure URI for Vcs-Git [ Sylvestre Ledru ] * Remove myself from the uploaders * start of automatic changelog entry * * Changes in metapackage dependencies -science-neuroscience-cognitive added: Depends: nifti2dicom, qnifti2dicom -science-economics added: Depends: r-cran-ecdat, r-cran-rsdmx, python-quantecon, r-other-gecon, r-other-bmr, r-cran-vars, recs, x13-arima-seats, minsky Suggests: science-social removed: Depends: qtoctave -science-robotics added: Depends: roslang, python-roscreate, python-rosunit, ros-mk, rosbuild, python-rosmake, python-rosclean, gazebo5, rosbash Suggests: gnuplot | gnuplot5 removed: Depends: ros, gazebo Suggests: octovis, gnuplot -science-robotics-dev added: Depends: libgazebo5-dev, libsimbody-dev, libignition-math2-dev, libignition-transport-dev -science-simulations added: Depends: python3-woo | python-woo, calculix-ccx, python-sfepy, pysph, libceres-dev Suggests: ceres-solver-doc, libopensurgsim-dev -science-viewing-dev added: Depends: python-gnuplotlib -science-tools added: Depends: cwltool, snakemake, python-h5py | python3-h5py, python-hdf5storage | python3-hdf5storage Suggests: libmemtailor-dev -science-linguistics added: Depends: apertium-lex-tools, cg3, libcld2-dev Suggests: apertium-en-ca, apertium-dan, apertium-es-pt, apertium-dan-nor, apertium-cat, apertium-fra, apertium-nno, apertium-fra-cat, apertium-br-fr, apertium-eu-es, apertium-fr-ca, apertium-en-es, apertium-oc-ca, apertium-pt-gl, apertium-swe-dan, apertium-af-nl, apertium-fr-es, apertium-apy, apertium-nob, apertium-eo-ca, apertium-pt-ca, apertium-nno-nob, apertium-es-gl, libcg3-dev, apertium-swe, apertium-es-ro, apertium-eo-es, apertium-oc-es, apertium-cy-en, apertium-es-ca -science-statistics added: Depends: apophenia-bin, r-cran-contfrac, r-cran-coin, r-cran-logspline, r-cran-hypergeo, r-cran-conting, r-cran-bayesfactor, r-cran-rsdmx, r-cran-modeltools, r-cran-vcdextra, r-cran-desolve, r-cran-elliptic, r-cran-rinside, r-cran-estimability, r-cran-afex, r-cran-bms, r-cran-pbivnorm, r-cran-lsmeans, r-cran-pbapply Suggests: r-cran-fastmatch, r-cran-r.utils, r-cran-blockmodeling, r-cran-futile.logger, r-cran-nnls, r-cran-catools, r-cran-lambda.r, libapophenia2-dev, r-cran-futile.options, r-cran-r.oo, r-cran-igraph, r-cran-magrittr -science-imageanalysis added: Depends: python-imageio, limereg removed: Depends: libcv-dev Suggests: libsimage-dev, libvigraimpex-dev, python-vigra, libvlfeat-dev, cimg-dev, libvisad-java -science-machine-learning added: Suggests: libdlib-dev removed: Depends: python-pyke -science-mathematics-dev added: Depends: libplb-dev, libmathic-dev, libfrobby-dev, libnauty2-dev, python-dtcwt | python3-dtcwt, python-cylp, libprimesieve5-dev, python-pyfftw | python3-pyfftw, libsymmetrica2-dev, libmpfi-dev, libecm-dev, libqsopt-ex-dev, libmathicgb-dev Suggests: libtestu01-0-dev, jsurf-alggeo removed: Suggests: libnauty-dev, libntl-dev, libcliquer-dev -science-highenergy-physics-dev added: Suggests: ckon -science-mathematics added: Depends: mathicgb, singular, surf-alggeo, qsopt-ex, normaliz, graphviz, frobby, geneagrapher, auto-07p, 4ti2 Recommends: gap-openmath, gap-grape Suggests: gap-io, gmp-ecm, gap-scscp, primesieve removed: Suggests: cliquer -science-electronics added: Depends: fpga-icestorm, arachne-pnr, graywolf -science-numericalcomputation added: Depends: python3-woo | python-woo, python-sfepy, geneva, libopengm-dev, libceres-dev, iep, qsopt-ex, easea, libclblas-dev, calculix-ccx, libarrayfire-unified-dev, pysph, python-bitstring | python3-bitstring, python-arrayfire | python3-arrayfire, libcompute-dev, libqsopt-ex-dev, libclfft-dev Suggests: ceres-solver-doc -science-typesetting added: Depends: gummi -science-engineering-dev added: Depends: libplb-dev, python-pynfft | python3-pynfft, libsis-jhdf5-java, libceres-dev Suggests: ceres-solver-doc, calculix-ccx-test, calculix-ccx-doc removed: Depends: python-nfft3 | python3-nfft3 -science-viewing added: Depends: python-matplotlib-venn | python3-matplotlib-venn, gnuplot | gnuplot5 Suggests: r-cran-vioplot removed: Depends: gnuplot -science-astronomy-dev added: Depends: astro-java, astro-development, astro-python, astro-python3, astro-tcltk removed: Depends: libnova-dev, python-pyfits, libgyoto1-dev, libstarlink-pal-dev, python-healpy, python-astropy-legacy, libcfitsio3-dev, libastro-fits-cfitsio-perl, libwcstools-dev, liberfa-dev, tcl-fitstcl, libcpl-dev, libivoafits-java, python-pywcs, libccfits-dev, slang-cfitsio, libfits-java, python-cpl, libchealpix-dev, libstarlink-ast-dev, libhealipx-cxx-dev, libworldwind-java, casacore-dev, libqfits-dev, wcslib-dev -science-astronomy added: Depends: astro-catalogs, astro-gdl, astro-viewers, astro-education, astro-tools, astro-python, astro-datareduction, astro-publication, astro-python3, astro-frameworks, astro-telescopecontrol, astro-simulation removed: Depends: gpredict, predict, sncosmo, gliese, python-pyfits, astronomical-almanac, boinc-app-seti, seesat5, eso-midas, audela, x11iraf, yorick-full, boinc-app-milkyway, worldwind, python3-pyfits, celestia, xplanet-images, lightspeed, splash, xorsa, savi, wcslib-tools, gcx, orbfit, sextractor, ftools-fv, astroquery, linoccult, kstars, python3-astropy, xplanet, casacore-tools, python-pywcs, iraf, fitscheck, xephem, python-cpl, spacechart, openuniverse, fitsverify, ssystem, wxastrocapture, saods9, qfits-tools, python-astropy, wcstools, xpa-tools, astroml, starplot, lynkeos.app, skycat, stellarium, python-pyds9, yale, funtools, python-pyraf, esorex, stardata-common, gyoto Suggests: cpl-plugin-uves, yorick-cubeview, cpl-plugin-fors, pgplot5, cpl-plugin-xsh, cpl-plugin-giraf, yorick-spydr, xtide, xtide-data, cpl-plugin-hawki, python-scientific, yorick-yao, stars, sunclock, scilab-celestlab, cpl-plugin-amber, cpl-plugin-kmos, yorick-gyoto, cpl-plugin-vimos, cpl-plugin-sinfo, pdl, yorick-mira, scilab-scimysql, scilab-overload, yorick-svipc, python-healpy Ignore: gstar -science-physics-dev added: Depends: libplb-dev, libasl-dev, python-pyfftw | python3-pyfftw removed: Depends: libismrmrd-dev -science-distributedcomputing added: Depends: python-scoop -science-nanoscale-physics-dev added: Depends: wannier90-1-dev, libpspio-dev, libclipper-dev, libsis-jhdf5-java Recommends: libhdf5-dev Suggests: python-h5py removed: Depends: libfox95, libxc, fftw-dev, libnbc, libtrilinos-dev, libpspio, sfftw-dev, wannier90-dev, libtrilinos-doc -science-physics added: Depends: gpaw -science-engineering added: Depends: calculix-ccx -science-nanoscale-physics added: Depends: libxc, scilab-sivp, liblevmar-2-6, gnuplot | gnuplot5, scilab, wannier90-2, wannier90-1 Recommends: ncview, nco Suggests: pymca, libgraphviz-perl, hdf5-helpers, python-pygraphviz, openmpi-doc | mpich-doc, netcdf-doc, maxima, dxsamples, axiom, hdf5-tools removed: Depends: wannier90, gnuplot, pymca, crystfel, espresso++, nco, netcdf-doc, ncview Recommends: axiom, maxima Suggests: openmpi-doc | mpich-doc | lam-mpidoc, scilab-sivp, gmsh * New metapackages: -science-imageanalysis-dev -- Andreas Tille Sun, 10 Apr 2016 09:44:18 +0200 debian-science (1.4) unstable; urgency=medium * Rerender Debian Science metapackages to reflect Jessie package pool. -- Andreas Tille Sun, 29 Mar 2015 20:53:40 +0200 debian-science (1.3) unstable; urgency=medium [ Andreas Tille ] * d/source/format: 3.0 (native) * removed postgresql-9.4-postgis-2.1 from task geography Closes: #757970 [ Ole Streicher ] * add astropy affiliated packages * start of automatic changelog entry * Changes in metapackage dependencies -science-neuroscience-cognitive added: Depends: python-nipype, python-mvpa2, python-nitime, python-dipy, python-nibabel, openwalnut-qt4, python-dicom, python-nipy removed: Depends: python-mvpa, python-nifti -science-viewing-dev added: Depends: python3-skimage, python-vtk6, python-plplot-qt, libvtk6-java, libplplot-dev, libvtk6-dev, python3-skimage-lib -science-linguistics added: Suggests: python-nltk, python3-nltk -science-machine-learning added: Depends: python-mvpa2 removed: Depends: python-mvpa -science-mathematics-dev added: Depends: libug-dev, python-pyoperators | python3-pyoperators, python-pyviennacl, python3-pyviennacl -science-electronics added: Depends: qflow, magic, yosys, berkeley-abc, qrouter -science-numericalcomputation added: Depends: python-lmfit | python3-lmfit -science-typesetting removed: Depends: texmacs-extra-fonts -science-engineering-dev added: Depends: libug-dev, r-cran-rnetcdf -science-astronomy added: Depends: splash, sncosmo, astroml, astroquery, python3-astropy -science-physics-dev added: Depends: python-xrayutilities -science-distributedcomputing added: Depends: htcondor removed: Depends: condor -science-dataacquisition-dev added: Depends: python-xrayutilities -science-nanoscale-physics-dev added: Depends: crystfel-dev, libssm-dev, r-cran-rnetcdf, python-xrayutilities -science-viewing added: Depends: trend, python-pyqtgraph Suggests: r-cran-scatterplot3d -science-nanoscale-physics added: Depends: liblapack3, libblas3, python-lmfit | python3-lmfit, crystfel removed: Depends: liblapack3gf, libblas3gf -science-meteorology-dev added: Depends: r-cran-rnetcdf -- Andreas Tille Fri, 24 Oct 2014 11:24:40 +0200 debian-science (1.2) unstable; urgency=medium [ Andreas Tille ] * d/copyright: DEP5 * some changed package names reflected in tasks files: - "syfi-bin" has been replaced with "sfc" - "life-apps" has been replaced with "feel++-apps" - "liblife-dev" has been replaced with "libfeel++-dev" * tasks/viewing: Add trend Closes: #739635 * tasks/typesetting: Remove texmacs-extra-fonts Closes: #683587 [ Ole Streicher ] * tasks/astronomy-dev: Remove non-free libsofa-c-dev. The replacement, liberfa-dev, is already in astronomy-dev. Closes: #751487 * start of automatic changelog entry * * Changes in metapackage dependencies -science-economics added: Depends: r-cran-pwt8 -science-viewing-dev added: Depends: libchealpix-dev -science-robotics added: Depends: octovis, octomap-tools Suggests: octovis -science-robotics-dev added: Depends: libccd-dev, liboctomap-dev -science-simulations added: Depends: music-bin -science-dataacquisition added: Depends: xyscan, filo -science-statistics added: Depends: r-cran-energy, rstudio, r-cran-mvnormtest, r-cran-expm, r-cran-ecodist -science-imageanalysis added: Suggests: python-vigra, libvigraimpex-dev -science-mathematics-dev added: Depends: python-pynfft | python3-pynfft, libsuperlu-dev, python-fftw3 | python3-fftw3 removed: Depends: libsuperlu3-dev, liblife-dev, python-fftw3 -science-mathematics removed: Depends: life-apps -science-electronics added: Depends: geda-gaf, geda-xgsch2pcb, drawtiming, gwave, qsapecng, gtkwave, gnusim8085 Suggests: libfeel++-dev removed: Suggests: liblife-dev -science-numericalcomputation added: Depends: python-csa, algotutor, libadolc-dev, libcolpack-dev -science-typesetting added: Depends: zotero-standalone Suggests: xul-ext-zotero removed: Depends: texmacs-extra-fonts, zotero -science-engineering-dev added: Depends: python-nfft3 | python3-nfft3, libfeel++-dev, python-fftw3 | python3-fftw3 removed: Depends: python-fftw3, liblife-dev -science-viewing added: Depends: trend, ctioga2, veusz, python-seaborn -science-astronomy-dev added: Depends: libhealipx-cxx-dev, libchealpix-dev, python-healpy removed: Depends: libsofa-c-dev -science-astronomy added: Depends: wxastrocapture, audela, eso-midas Suggests: python-healpy removed: Depends: midas -science-engineering added: Depends: libadios-bin, feel++-apps, sfc removed: Depends: life-apps, syfi-bin -science-physics-dev added: Depends: python-fftw3 | python3-fftw3, python-pynfft | python3-pynfft, libfeel++-dev, libismrmrd-dev, python-multipletau | python3-multipletau removed: Depends: python-fftw3 -science-nanoscale-physics-dev added: Suggests: libfeel++-dev removed: Suggests: liblife-dev -science-nanoscale-physics added: Suggests: feel++-apps removed: Suggests: life-apps -science-physics added: Suggests: feel++-apps removed: Suggests: liblife-dev, life-apps -science-meteorology-dev added: Depends: libwreport-dev Suggests: libfeel++-dev removed: Suggests: liblife-dev -- Andreas Tille Thu, 19 Jun 2014 10:20:04 +0200 debian-science (1.1) unstable; urgency=low [ Andreas Tille ] * tasks/robotics-dev: Development of robotics applications * tasks/financial: Packages for financial engineering * tasks/enineering: Fix typo Closes: #730282 * Moved Vcs to Git * new task: logic * tasks/geography: s/postgresql-9.1-postgis/postgresql-9.3-postgis-2.1/ Closes: #732414 * task/viewing-dev: development of visualisation applications * task/geometry: new task * task/social: new task * task/tools: new task (but no new metapackage, just for web senitinel) * task/presentation: new task * task/devices: new task (but no new metapackage, just for web senitinel) [ Sébastien Villemot ] * tasks/economics: Add new task for economics * tasks/{mathematics, numericalcomputation}: Add julia, suggest matlab-support * tasks/distributedcomputing: Suggest octave-mpi * tasks/statistics: Rename pandas to python-pandas (now in Debian) [ Denis Barbier ] * tasks/{engineering,engineering-dev,nanoscale-physics-dev,physics}: opencascade had been superseded by oce * start of automatic changelog entry * * Changes in metapackage dependencies -science-meteorology added: Depends: python-netcdf, python-sphere Suggests: python-dap removed: Depends: python-netcdf4, hdf-eos4, hdf-eos5, python-spherepack Suggests: pydap -science-robotics added: Depends: openhrp, choreonoid, openrtm, liburdfdom-tools, openrave, pcl, ros, gazebo Suggests: gnuplot, ompl-demos, octave, libvtk5.4, libcoin60-runtime, arduino-mk removed: Depends: libboost-dev, gnuplot, libcomedi0, libopenigtlink1, libcv-dev, octave, libode-dev, libvtk5.4, libcoin60-runtime -science-highenergy-physics added: Depends: libroot-net-ldap5.34, libroot-math-quadp5.34, libroot-math-mathcore5.34, libroot-tmva5.34, libroot-math-genvector5.34, libroot-bindings-ruby5.34, libroot-graf2d-postscript5.34, libroot-tree-treeplayer5.34, libroot-bindings-python5.34, libroot-proof-clarens5.34, libroot-net-auth5.34, libroot-graf3d-gl5.34, libroot-net-bonjour5.34, libroot-html5.34, libroot-math-unuran5.34, libroot-misc-memstat5.34, libroot-math-splot5.34, libroot-proof-proofplayer5.34, libroot-gui-ged5.34, libroot-math-mathmore5.34, libroot-net5.34, libroot-graf2d-graf5.34, libroot-math-mlp5.34, libroot-core5.34, libroot-montecarlo-vmc5.34, libroot-math-smatrix5.34, libroot-math-matrix5.34, libroot-graf2d-gpad5.34, libroot-math-physics5.34, libroot-geom5.34, libroot-misc-minicern5.34, libroot-tree5.34, libroot-proof5.34, libroot-io-xmlparser5.34, libroot-math-foam5.34, libroot-hist5.34, libroot-hist-spectrum5.34, libroot-io5.34, libroot-roofit5.34, libroot-gui5.34, libroot-montecarlo-eg5.34, libroot-misc-table5.34, libroot-graf3d-eve5.34, libroot-graf3d-g3d5.34, libroot-math-minuit5.34 -science-engineering added: Depends: salome-yacs, dime, salome-paravis, tetgen, salome-gui, salome-smesh, eficas, metis-edf, oce-draw, salome-med, code-aster, diet-agent, salome-jobmanager Suggests: logcentral, salome-kernel, ann-tools, logcentral-tools removed: Depends: opencascade-draw, salome -science-simulations added: Depends: radiance -science-geography added: Depends: hyantesite, postgresql-9.3-postgis-2.1 removed: Depends: postgresql-9.1-postgis -science-linguistics added: Depends: travatar, collatinus, sequitur-g2p Suggests: libtimbl4-dev, libfolia-dev, frogdata, libticcutils2-dev removed: Suggests: libfolia1-dev -science-dataacquisition removed: Suggests: libgpib-bin -science-statistics added: Depends: r-cran-deldir, r-cran-fastcluster, r-cran-spatstat, r-cran-timedate, python-pandas, r-cran-spam, r-cran-statmod, r-cran-mass, r-cran-permute, r-cran-lhs Suggests: libtamuanova-dev removed: Depends: r-cran-rmetrics, r-other-gking-matchit, r-cran-fseries, r-cran-vr Suggests: pandas -science-imageanalysis added: Depends: teem-apps Suggests: libvlfeat-dev removed: Depends: libteem1 -science-machine-learning added: Depends: r-cran-gbm, r-cran-tgp Suggests: ask -science-mathematics-dev added: Depends: libann-dev, libfftw3-dev, libarpack++2-dev, libdouble-conversion-dev, libscscp1-dev, libzn-poly-dev, python-dolfin, libfeel++-dev, liblfunction-dev, libtachyon-dev, libeigen3-dev, liblbfgs-dev, code-saturne-bin, libmpfrc++-dev, libsymmetrica-dev, libalglib-dev, libdogleg-dev, fftw-dev, libpynac-dev, libeinspline-dev, libnfft3-dev, minpack-dev, libec-dev, libsuitesparse-metis-dev, sfftw-dev, libslepc3.4.2-dev, libigraph0-dev, libparmetis-dev, libtet1.4-dev, libqcustomplot-dev, libfplll-dev, code-saturne-include, libratpoints-dev, libviennacl-dev, python-numexpr | python3-numexpr, libflann-dev, libcdd-dev, liblinbox-dev, libquadrule-dev, libm4ri-dev, libdune-grid-dev, libgf2x-dev, libopenturns-dev, libopenblas-dev, libgnuplot-iostream-dev, libiml-dev, python-linop | python3-linop, python-ferari, python-openturns, libm4rie-dev, libqhull-dev, libcminpack-dev, libcneartree-dev, liblrcalc-dev, gap-dev, python-glpk, python-fftw3, libglpk-java Suggests: openturns-examples, givaro-user-doc, libdune-localfunctions-dev, libcliquer-dev, libjlapack-java, libntl-dev, libmtj-java, libnetlib-java, libdune-istl-dev removed: Depends: libmei-dev, libcneartree3-dev, libslepc3.0.0-dev Suggests: givaro-users-doc, libopenturns-dev, python-openturns, openturns-wrapper -science-highenergy-physics-dev added: Depends: libhepmcinterface8-dev removed: Depends: libhepmcinterface-dev -science-mathematics added: Depends: gap-small-groups-extra, coinor-symphony, tetgen, julia, sympow, eclib-tools, gap-prim-groups, xmds2, gfan, gap-table-of-marks, sagemath-database-polytopes, python-minieigen, qhull-bin, tachyon, gap-character-tables, sagemath-database-graphs, lrcalc, gap-float, palp, fplll-tools, lcalc, gap-guava, sfc, sagemath-database-elliptic-curves, gap-trans-groups, feel++-apps, sagemath-database-conway-polynomials, gap-small-groups Suggests: gap-online-help, gap-gapdoc, cliquer, ann-tools, matlab-support removed: Depends: singular, libgivaro0 -science-numericalcomputation added: Depends: libsuitesparse-dev, vitables, coinor-symphony, metis, julia, libsuitesparse-metis-dev, admesh, metis-edf, python-demgengeo, libdune-grid-dev, python-tables | python3-tables, coinor-clp, python-gts Suggests: scilab-jims, libsundials-serial-dev, octave-sundials, libscirenderer-java, matlab-support, libquantum-dev, libcneartree-dev, python-sciscipy, scilab-metanet -science-typesetting added: Depends: ipe5toxml, ipe Suggests: libqtexengine-dev, luasseq, svgtoipe -science-engineering-dev added: Depends: libnlopt-dev, libfreefoam-dev, libann-dev, python-fftw3, libflann-dev, libnfft3-dev, libcoin80-dev, python-collada, libslicot-dev, libdxflib-dev, salome-kernel-dev, libtet1.4-dev, liboce-visualization-dev, code-saturne-bin, liboce-ocaf-dev, libslepc3.4.2-dev, libdime-dev, code-saturne-include, libmetis-edf-dev Suggests: libdiet-client2.8-dev, openturns-examples, libgtkdatabox-0.9.2-0-dev, libdiet-dagda2.8-dev, libdiet-admin2.8-dev, libdiet-sed2.8-dev removed: Depends: libopencascade-dev, libfvm-dev, libslepc3.0.0-dev, freefoam-dev Suggests: libgtkdatabox-0.9.1-1-dev -science-viewing added: Depends: scidavis, libqglviewer2, feedgnuplot, ovito, python-gnuplot, libgnuplot-iostream-dev Suggests: libqglviewer-dev, python-vtk, libsoqt4-dev, worldwind, libcoin80-dev, libvtk5-qt4-dev, libvtk5-dev, vtk-examples, libvtk-java, libgrits-dev, r-cran-scales, circos-tools, r-cran-ggplot2, tcl-vtk, python-pivy, r-cran-labeling removed: Depends: grits -science-neuroscience-modeling added: Suggests: python-pynn removed: Suggests: pynn -science-astronomy-dev added: Depends: tcl-fitstcl, libivoafits-java, libgyoto1-dev, libfits-java, liberfa-dev removed: Depends: libgyoto0-dev -science-astronomy added: Depends: python-astropy, xpa-tools, python3-pyfits, python-pywcs, iraf, fitscheck, python-pyfits, python-cpl, skycat, python-pyds9, python-pyraf, fitsverify, x11iraf Suggests: cpl-plugin-hawki, cpl-plugin-uves, cpl-plugin-sinfo, cpl-plugin-fors, cpl-plugin-amber, cpl-plugin-xsh, cpl-plugin-giraf, cpl-plugin-vimos, cpl-plugin-kmos removed: Depends: heasoft-fv -science-physics-dev added: Depends: libfreefoam-dev, fftw-dev, libnfft3-dev, python-openctm, sfftw-dev, libfftw3-dev, libopenctm-dev, python-fftw3, python-quantities Suggests: libtriangle-dev removed: Depends: freefoam-dev -science-distributedcomputing added: Depends: mpich Suggests: octave-mpi removed: Depends: mpich2 -science-dataacquisition-dev added: Depends: liblog4tango5-dev, libtango8-dev removed: Depends: libtango7-dev, liblog4tango4-dev -science-nanoscale-physics-dev added: Depends: fftw-dev, python-fabio, pyfai, sfftw-dev, liboce-visualization-dev, liboce-ocaf-dev, libopenmpi-dev | libmpich-dev, libcbf-dev Suggests: libfftw3-doc, oce-draw removed: Depends: libfftw3-doc, libopencascade-dev Suggests: opencascade-draw -science-electrophysiology added: Suggests: python-neo, libbiosig-dev removed: Suggests: libbiosig0 -science-nanoscale-physics added: Depends: cbflib-bin, openmpi-bin | mpich Suggests: openmpi-doc | mpich-doc | lam-mpidoc removed: Depends: openmpi-doc | mpich2-doc | mpi-doc, libopenmpi1.3 | libmpich2-1.2 | libmpich1.0gf, openmpi-bin | mpich2 | mpich-bin -science-chemistry added: Depends: python-mmtk, gromacs | gromacs-mpich | gromacs-openmpi removed: Depends: gromacs | gromacs-lam | gromacs-mpich | gromacs-openmpi -science-physics added: Depends: oce-draw Suggests: openctm-tools removed: Depends: opencascade-draw -science-meteorology-dev added: Depends: libfreefoam-dev, sfftw-dev, libhdfeos-dev, fftw-dev, libsphere-dev Suggests: openturns-examples removed: Depends: libspherepack-dev, libhe4-hdfeos-dev, openturns-wrapper, freefoam-dev * New metapackages: -science-viewing-dev -science-geometry -science-presentation -science-economics -science-robotics-dev -science-devices -science-logic -science-financial -science-tools -science-social -- Andreas Tille Tue, 17 Dec 2013 22:02:11 +0100 debian-science (1.0) unstable; urgency=low * Update metapackages for Wheezy * debian/control, debian-gis-tasks.desc: Usual changes of dependency based on the resolving of new packages in Debian as specified in the tasks files [ Sylvestre Ledru ] * tasks/robotics: add some more dependencies. [ Andreas Tille ] * debian/tasks/simulation: Add new task for simulations * debian/tasks/physics-dev: Add new task for development of physical applications [ Picca Frédéric-Emmanuel ] * tasks/dataacquisition: Add python-taurus * tasks/{mathematics, numericalcomputation, physics, simulation}: Add python-deap * tasks/{chemistry, nanoscale-physics, physics, simulations}: Add fdmnes [ Andreas Tille ] * tasks/highenergy-physics-dev: Create metapackage targeting at development of high energy physics applications -- Andreas Tille Mon, 15 Apr 2013 10:39:06 +0200 debian-science (0.16) unstable; urgency=low [ Joost van Baal-Ilić ] * tasks/linguistics: add some more dependencies. [ Andreas Tille ] * debian/control(.stub) Standards-Version: 3.9.3 (no changes needed) * debian/control: Usual changes of dependency based on the resolving of new packages in Debian as specified in the tasks files * tasks/{robotics,numericalcomputation,mathematics}: s/octave3.2/octave/ Closes: #667587 -- Andreas Tille Fri, 30 Dec 2011 08:45:03 +0100 debian-science (0.15) unstable; urgency=low * config/control: Mention new metapackage science-highenergy-physics (which was lacking in last changelog) * tasks/dataacquisition-dev: New metapackage to develop data aquisition applications * tasks/statistics: s/r-cran-design/r-cran-rms/ Closes: #649446 * tasks/distributedcomputing: - s/mpichpython/openmpipython/ - s/lampython/mpich2python/ Closes: #646417 -- Andreas Tille Sat, 17 Dec 2011 23:56:58 +0100 debian-science (0.14) unstable; urgency=low * tasks/engineering-dev: Deleted libqwt5-qt3-dev which will be removed from Debian Closes: #629869 * tasks/astronomy(-dev): Added several packages according to a hint of Luk Claes Closes: #633562 * tasks/physics: s/quantumespresso/quantum-espresso/ Closes: #646701 * Fixed Vcs fields * Removed explicite Build-Dependency because it is implicitely given by Build-Depending blends-dev -- Andreas Tille Fri, 28 Oct 2011 12:36:56 +0200 debian-science (0.13) unstable; urgency=low [ Sylvestre Ledru ] * libmatheval1-dev => libmatheval-dev (Closes: #612758) [ Andreas Tille ] * Standards-Version: 3.9.2 (no changes needed) * New metapackages: - science-bci brain-computer interface - science-distributedcomputing distributed computing packages - science-electrophysiology packages related to electrophysiology - science-nanoscale-physics packages related to nanoscale physics - science-nanoscale-physics-dev packages useful for developing nanoscale physics applications - science-neuroscience-datasets packages for Neuroscience Datasets - science-neuroscience-modeling packages for modeling of neural systems - science-psychophysics packages related to packages for psychophysics * Several new dependencies auto generated via Blends tools -- Andreas Tille Wed, 04 May 2011 11:34:38 +0200 debian-science (0.12) unstable; urgency=low * tasks/statistics: Fix typo in package description Closes: #592701 * config/control: Depends: blends-common (>= 0.6.15) * debian/control.stub: Build-Depends-Indep: blends-dev (>= 0.6.15) Closes: #601959 * New tasks: science-nanoscale-physics and science-nanoscale-physics-dev -- Andreas Tille Mon, 08 Nov 2010 16:14:37 +0100 debian-science (0.11) unstable; urgency=low [ Sylvestre Ledru ] * hkl package added * salome is now in debian. Removing description [ Andreas Tille ] * New task: machine-learning * tasks/robotics: libvtk5 -> libvtk5.4 Closes: #591444 * Several prospective packages are now official Debian packages and this included automatically via blends-dev build mechanism * Standards-Version: 3.9.1 (no changes needed) * Build-Depends: blends-dev (>= 0.6.14) -- Andreas Tille Tue, 03 Aug 2010 09:46:09 +0200 debian-science (0.10) unstable; urgency=low * Rebuild against blends-dev >= 0.6.12. This results in using a prerm script instead of postrm which ensures that blends-common is installed while this script is running * Standards-Version: 3.8.4 (no changes needed) -- Andreas Tille Thu, 18 Mar 2010 09:26:14 +0100 debian-science (0.9) unstable; urgency=low * Depend from blends-common >= 0.6.9 and explain in NEWS.Debian that no attempt to take over any CDD related configuration Closes: #562554 -- Andreas Tille Sun, 24 Jan 2010 13:39:58 +0100 debian-science (0.8) unstable; urgency=low [ Sylvestre Ledru ] * Many packages updates * Some cleanup * Change of my email address [ Andreas Tille ] * config/control: Depends: blends-common (>= 0.6.8), which really Closes: #542658 * tasks/geography: s/postgresql-8.3-postgis/postgresql-8.4-postgis/ Closes: #559601 -- Andreas Tille Wed, 09 Dec 2009 20:12:09 +0100 debian-science (0.7) unstable; urgency=low [ Andreas Tille ] * Change section of metapackages from misc to science * debian/control.stub: - Fixed Vcs-Svn (missing svn/) - Build-Depends: blends-dev (>= 0.6.6) * config/control: Depends: blends-common (>= 0.6.6) Closes: #542658 * Debhelper 7 * Standards-Version: 3.8.3 (no changes needed) [ Alastair McKinstry ] * Added files to tasks/meteorology and tasks/meteorology-dev. -- Andreas Tille Fri, 21 Aug 2009 14:20:43 +0200 debian-science (0.6) unstable; urgency=low [ Andreas Tille ] * tasks/electronics: - removed vipec which is not in Debian any more - Increased dependency from Suggests to Depends for electric because it is not orphaned any more * tasks/physics: - lowercase prospective packages ESPResSo++ and PWscf Closes: #523077 * debian/control.stub: increased version of blends-dev dependency to 0.6.3 to make sure all package names will be lower cased [ Alastair McKinstry ] * Added science-meteorology and science-meteorology-dev metapackages. * tasks/meteorology: - Added. Depend on cdo and DB-All.e * tasks/meteorology-dev: - Added. Depend on libemos-dev. -- Andreas Tille Tue, 14 Apr 2009 10:51:31 +0200 debian-science (0.5) unstable; urgency=low [ Andreas Tille ] * tasks/mathematics-dev: replace libs by lib-devels Closes: #515947 * Vcs fields were fixed in previous version but closing the bug here which was reported later while the package was sitting in new Closes: #515943 * science-mathematics: s/Depends: Isabelle/Depends: isabelle/ Closes: #518048 * Bumped policy to 3.8.1 and make use of the new feature that debian/control allows comment lines starting with # with no preceding whitespace. [Policy paragraph 5.2] * tasks/geography: Depend from proj-bin instead of proj Closes: #521819 * Machine readable copyright file * Enhanced long desriptions for those tasks where lintian claimed about extended-description-is-probably-too-short [ Michael Hanke ] * Added preliminary task for cognitive neuroscience. -- Andreas Tille Thu, 02 Apr 2009 11:50:18 +0200 debian-science (0.4) experimental; urgency=low * Use blends-dev instead of cdd-dev * Adapted Vcs fields to new location (cdd -> blends) * New metapackages: astronomy-dev, dataacquisition, engineering-dev, imageanalysis, numericalcomputation -- Andreas Tille Tue, 06 Jan 2009 09:34:13 +0100 debian-science (0.3) unstable; urgency=low * Some applications / libraries added (Closes: #491474) * Add myself as uploader -- Sylvestre Ledru Sat, 19 Jul 2008 20:06:41 +0200 debian-science (0.2) unstable; urgency=low * tasks/geography: removed hyphen from description Closes: #486929 * tasks/astronomy: Added descriptions for packages that vanished from Debian * tasks/*: s/Depends/Recommens/ - this is done by current cdd-dev anyway The rationale for this behaviour is explained there. It seems logical to state in the tasks files what finally is implemented. We might think about enabling real Depends later if there might be reasons for this. * Current cdd-gen-control does not handle Recommends properly and thus all Recommends in tasks files were turned to Depends. * tasks/engineering: New task with some new dependencies and some moved from tasks/physics to this place Closes: #488962 -- Andreas Tille Thu, 03 Jul 2008 08:28:52 +0200 debian-science (0.1) unstable; urgency=low [ Frederic Daniel Luc Lehobey ] * Initial Release. [ Andreas Tille ] * DM-Upload-Allowed: yes * Vcs-Browser, Vcs-Svn * debian-science-maintainers@lists.alioth.debian.org as maintainer * cdd-dev >= 0.5.2 * Standards-Version: 3.8.0 -- Andreas Tille Sat, 07 Jun 2008 00:30:31 +0200