r-cran-qtl (1.42-8-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.1.3 * debhelper 11 -- Andreas Tille Thu, 22 Feb 2018 09:38:47 +0100 r-cran-qtl (1.41-6-2) unstable; urgency=medium * Moved packaging from SVN to Git * Standards-Version: 4.1.1 -- Andreas Tille Fri, 17 Nov 2017 14:48:35 +0100 r-cran-qtl (1.41-6-1) unstable; urgency=medium * New upstream version * debhelper 10 * Standards-Version: 4.1.0 * Add README.source to document binary files -- Andreas Tille Fri, 08 Sep 2017 15:33:40 +0200 r-cran-qtl (1.40-8-1) unstable; urgency=medium * New upstream version * Convert to dh-r * Canonical homepage for CRAN * d/watch: version=4 * Recommends: ruby since code contains ruby code -- Andreas Tille Fri, 11 Nov 2016 09:29:19 +0100 r-cran-qtl (1.39-5-2) unstable; urgency=medium * Fix installation of test data inside the package * Fix autopkgtest -- Andreas Tille Fri, 29 Apr 2016 11:15:13 +0200 r-cran-qtl (1.39-5-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control * Testsuite changed from r-cran-unit to r-cran-testthat -- Andreas Tille Wed, 27 Apr 2016 23:46:05 +0200 r-cran-qtl (1.37-11-1) unstable; urgency=medium * New upstream version -- Andreas Tille Tue, 22 Sep 2015 21:55:04 +0200 r-cran-qtl (1.36-6-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control * fix DEP5 short name -- Andreas Tille Thu, 02 Jul 2015 15:36:46 +0200 r-cran-qtl (1.33-7-1) unstable; urgency=medium * New upstream version * Normalised source package name -- Andreas Tille Mon, 18 Aug 2014 15:17:44 +0200 qtl (1.32-10-1) unstable; urgency=medium * New upstream version * Adapt autopkgtest to be similar to other test scripts -- Andreas Tille Mon, 23 Jun 2014 13:35:41 +0200 qtl (1.30-4-1) unstable; urgency=medium * New upstream version * debian/upstream -> debian/upstream/metadata * cme fix dpkg-control * drop "Recommends: r-cran-rlecuyer" since this is neither packaged for Debian nor mentioned inside source code * Update debian/README.test to explain how to sensibly test the package * Provide autopkgtest * Enhance long description (avoid using-first-person-in-description) -- Andreas Tille Tue, 18 Mar 2014 16:05:24 +0100 qtl (1.27-10-1) unstable; urgency=low * New upstream version * debian/control: - debhelper 9 (also debian/compat) - normalised using `cme fix dpkg-control` - better wording in long description - drop versioned Build-Depends from r-base-dev because the version in latest stable is sufficient -- Andreas Tille Wed, 15 May 2013 14:07:47 +0200 qtl (1.25-15-2) unstable; urgency=low * Rebuilt for R version 3 * Bumped policy to 3.9.4 -- Steffen Moeller Tue, 02 Apr 2013 00:48:41 +0200 qtl (1.25-15-1) unstable; urgency=low * New upstream version - suggesting rlecuyer R package - major fix for interpretation of numeric IDs in checkcovar -- Steffen Moeller Sat, 18 Aug 2012 21:42:30 +0200 qtl (1.23-16-2) UNRELEASED; urgency=low * debian/upstream: - Fixed yaml Syntax - Fixed authors syntax - Added URL -- Andreas Tille Mon, 26 Mar 2012 21:29:33 +0200 qtl (1.23-16-1) unstable; urgency=low * New upstream version * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Build-Depends: r-base-dev (>= 2.14.2~20120222) * debian/rules: - Remove R:Depends substitution variable which is now included in /usr/share/R/debian/r-cran.mk - Code is trivial enough to remove licensing comment * Split debian/README.Debian up into README.test and debian/upstream * debian/docs: Install README.test * debian/copyright: Rewritten to match DEP5 and verified using cme fix dpkg-copyright -- Andreas Tille Fri, 23 Mar 2012 23:54:28 +0100 qtl (1.22-21-1) unstable; urgency=low * New upstream version. -- Steffen Moeller Mon, 09 Jan 2012 14:45:00 +0100 qtl (1.21-2-2) unstable; urgency=low * Rebuilded using latest R Closes: #646052 * Standards-Version: 3.9.2 (no changes needed) * Fixed Vcs fields -- Andreas Tille Fri, 21 Oct 2011 15:30:24 +0200 qtl (1.21-2-1) unstable; urgency=low * New upstream version -- Steffen Moeller Mon, 15 Aug 2011 10:59:08 +0200 qtl (1.20-15-1) unstable; urgency=low * New upstream version * Debhelper 8 (control+compat) -- Andreas Tille Mon, 14 Mar 2011 09:31:31 +0100 qtl (1.19-20-1) unstable; urgency=low * New upstream version -- Andreas Tille Wed, 26 Jan 2011 10:04:53 +0100 qtl (1.18-7-1) unstable; urgency=low * New upstream version * Standards-Version: 3.9.1 (no changes needed) -- Andreas Tille Wed, 24 Nov 2010 11:21:26 +0100 qtl (1.16-6-2) unstable; urgency=low * Added myself to Uploaders * Debhelper 7 * Moved from pkg-bioc to debian-med SVN repository * Updated README.Debian * Added upstream-metadata.yaml * debian/{control,rules}: Depends: ${R:Depends} * Source format 3.0 (quilt) * Fixed spelling of Debian Med (removed dash) -- Andreas Tille Fri, 04 Jun 2010 14:12:49 +0200 qtl (1.16-6-1) unstable; urgency=low * New upstream version - Integration of MQM mapping of mapqtl - Many smallish or larger improvements * Updated standards-version - Added debian/source/format indication -- Steffen Moeller Fri, 04 Jun 2010 13:05:47 +0200 qtl (1.14-2-1) unstable; urgency=low * dependency on R 2.7.10 * new upstream version with only minor changes -- Steffen Moeller Wed, 28 Oct 2009 23:09:18 +0000 qtl (1.13-7-1) unstable; urgency=low * new upstream version with various bug fixes * bumped standard compliance to 3.8.3 (no changes required) -- Steffen Moeller Mon, 28 Sep 2009 13:39:40 +0200 qtl (1.12-26-1) unstable; urgency=low * new upstream version - support for recombinant inbred lines (RIL) - simpler notation to reference pseudonmarkers * license change to GPL-3 * adapted section to gnu-r -- Steffen Moeller Thu, 09 Jul 2009 13:52:50 +0200 qtl (1.11-12-1) unstable; urgency=low * new upstream version -- Steffen Moeller Thu, 14 May 2009 13:47:06 +0200 qtl (1.10-28-1) unstable; urgency=low * new upstream version - resolves inconsistencies in copyright - various changes affecting stability or performance - more on http://www.rqtl.org/STATUS.txt * debian/copyright updated * removed PDFs from source tree -- Steffen Moeller Fri, 20 Feb 2009 18:50:00 +0100 qtl (1.09-43-2) unstable; urgency=low * Dirk requested to be removed from the uploaders list * Allowing Debian-Med community maintenance albeit package remaining under pkg-bioc control for now. * Added Vcs-Browser and Vcs-Svn fields. -- Steffen Moeller Mon, 29 Sep 2008 17:18:20 +0200 qtl (1.09-43-1) unstable; urgency=low * New upstream release. -- Steffen Moeller Wed, 30 Jul 2008 16:42:46 +0200 qtl (1.08-56-1) unstable; urgency=low * New upstream release. * Establishing compatibility to R release 2.7. -- Steffen Moeller Fri, 11 Apr 2008 11:48:30 +0200 qtl (1.07-12-2) unstable; urgency=low * [debian/control] - updated description - adhering to latest standards version * [debian/copyright] - updated Steffen's email adress * Recompilation will induce transition to gfortran -- Steffen Moeller Tue, 11 Mar 2008 10:41:54 +0100 qtl (1.07-12-1) unstable; urgency=low * New upstream version. * Major changes: - Upstream completely rewrote the effectscan function, so that it now uses multiple imputation results and deals with the X chromosome appropriately. - Upstream fixed an important bug in fitqtl, in which incorrect results could be obtained if covariates were placed before QTL terms in the formula. -- Steffen Moeller Wed, 10 Oct 2007 13:43:39 +0200 qtl (1.06-43-1) unstable; urgency=low * New upstream release * debian/control: (Build-)Depends: updated to r-base-dev (>= 2.4.0) -- Dirk Eddelbuettel Sun, 12 Aug 2007 15:30:27 -0500 qtl (1.05-2-1) unstable; urgency=low * New upstream release -- Dirk Eddelbuettel Thu, 9 Nov 2006 17:57:04 -0600 qtl (1.04-53-1) unstable; urgency=low * New upstream release -- Dirk Eddelbuettel Sun, 29 Oct 2006 11:17:51 -0600 qtl (1.04-52-1) unstable; urgency=low * New upstream release * debian/control: (Build-)Depends: updated to r-base-dev (>= 2.4.0) -- Dirk Eddelbuettel Sat, 28 Oct 2006 11:26:41 -0500 qtl (1.03-14-1) unstable; urgency=low * New upstream release -- Dirk Eddelbuettel Fri, 21 Jul 2006 18:16:41 -0500 qtl (1.02-26-1) unstable; urgency=low * New upstream release * New maintainer as Steffen's NM progress appears to have stalled * debian/rules: Simplified to cdbs-based one-liner sourcing r-cran.mk * debian/control: Hence Build-Depends: updated to r-base-dev (>= 2.3.0) * debian/control: Standards-Version: increased to 3.7.2 * debian/watch: Updated file to version: 3 -- Dirk Eddelbuettel Thu, 8 Jun 2006 21:13:27 -0500 qtl (1.01-9-1) unstable; urgency=low * New upstream version. [ Dirk Eddelbuettel ] * Rename upstream tarball correctly as .orig.tar.gz before building package to prevent accidental build as a Debian native package * debian/post{inst,rm}: No longer call R to update html help index -- Steffen Moeller Thu, 1 Dec 2005 15:20:00 +0100 qtl (0.99.24-1) unstable; urgency=low * New upstream version. -- Steffen Moeller Sun, 15 May 2005 23:54:03 +0200 qtl (0.98.57-2.1) unstable; urgency=low * NMU * Coordinated with Maintainer as part of larger R 2.0.0 update effort * Rebuilt under R 2.0.0 * debian/control: Updated Build-Depends: and Depends: accordingly -- Dirk Eddelbuettel Sat, 9 Oct 2004 20:55:08 -0500 qtl (0.98.57-2) unstable; urgency=low * added postinst script * added postrm script too [ Dirk Eddelbuettel ] -- Steffen Moeller Tue, 19 Sep 2004 23:24:00 +0100 qtl (0.98.57-1) unstable; urgency=low * New upstream version. - Proper support of the X chromosome - many little improvements -- Steffen Moeller Tue, 19 Sep 2004 01:06:00 +0100 qtl (0.97.22-1) unstable; urgency=low * New upstream version. -- Steffen Moeller Tue, 14 Jan 2004 10:55:00 +0100 qtl (0.97.21-5) unstable; urgency=low * Retrieval of genetical map from EnsEMBL (http://www.ensembl.org) * Also implemented access to EnsEMBL via RMySQL, package r-cran-mysql available on mentors.debian.net -- Steffen Moeller Tue, 11 Nov 2003 13:14:00 +0100 qtl (0.97.21-4) unstable; urgency=low * Retrieval of physical map from EnsEMBL (http://www.ensembl.org) Requires RODBC. -- Steffen Moeller Tue, 11 Nov 2003 13:14:00 +0100 qtl (0.97.21-3) unstable; urgency=low * added demo, code copied from "A starting point" help to the qtl library -- Steffen Moeller Tue, 11 Nov 2003 13:14:00 +0100 qtl (0.97.21-2) unstable; urgency=low * dec and quote parameters passed to internally called R base function read.table for read.cross * second parameter (dir) interpreted as file if file unset -- Steffen Moeller Tue, 3 Nov 2003 22:05:03 +0100 qtl (0.97.21-1) unstable; urgency=low * Initial Debian Release (closes: #214601) -- Steffen Moeller Tue, 8 Oct 2003 09:02:03 +0100